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(-) Description

Title :  ACTIVE STATE OF INTACT SENSOR DOMAIN OF HUMAN RNASE L WITH 2-5A BOUND
 
Authors :  Y. Han, G. Whitney, J. Donovan, A. Korennykh
Date :  23 Jul 12  (Deposition) - 31 Oct 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Ankyrin-Repeat Domain, Single-Stranded Rna, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Han, G. Whitney, J. Donovan, A. Korennykh
Innate Immune Messenger 2-5A Tethers Human Rnase L Into Active High-Order Complexes.
Cell Rep V. 2 902 2012
PubMed-ID: 23084743  |  Reference-DOI: 10.1016/J.CELREP.2012.09.004

(-) Compounds

Molecule 1 - 2-5A-DEPENDENT RIBONUCLEASE
    Chains: A, B, C, D
    EC Number: 3.1.26.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: 2-5A-SENSOR DOMAIN (ANK DOMAIN)
    Gene: RNASEL, RNS4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 2-5A-DEPENDENT RNASE, RIBONUCLEASE 4, RIBONUCLEASE L, RNASE L

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
125A4Ligand/Ion5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
125A1Ligand/Ion5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
125A1Ligand/Ion5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
125A1Ligand/Ion5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
125A1Ligand/Ion5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:55 , GLU A:57 , GLY A:58 , TRP A:60 , ASN A:65 , GLN A:68 , LYS A:89 , ASN A:91 , ASP A:122 , PHE A:126 , GLU A:131 , TYR A:135 , ARG A:155 , MET B:306 , ARG B:309 , ARG B:310 , TYR B:312BINDING SITE FOR RESIDUE 25A A 401
2AC2SOFTWAREMET A:306 , ARG A:309 , ARG A:310 , TYR A:312 , GLU B:55 , GLU B:57 , GLY B:58 , TRP B:60 , ASN B:65 , GLN B:68 , LYS B:89 , ASN B:91 , ASP B:122 , PHE B:126 , GLU B:131 , TYR B:135 , ARG B:155BINDING SITE FOR RESIDUE 25A B 401
3AC3SOFTWAREGLU C:55 , GLU C:57 , GLY C:58 , TRP C:60 , ASN C:65 , GLN C:68 , LYS C:89 , ASP C:122 , PHE C:126 , GLU C:131 , TYR C:135 , ARG C:155 , MET D:306 , ARG D:309 , ARG D:310 , TYR D:312BINDING SITE FOR RESIDUE 25A C 401
4AC4SOFTWAREMET C:306 , ARG C:309 , ARG C:310 , TYR C:312 , GLU D:55 , GLU D:57 , GLY D:58 , TRP D:60 , ASN D:65 , GLN D:68 , LYS D:89 , ASP D:122 , PHE D:126 , GLU D:131 , TYR D:135 , ARG D:155BINDING SITE FOR RESIDUE 25A D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G8L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G8L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G8L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G8L)

(-) Exons   (0, 0)

(no "Exon" information available for 4G8L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh..........hhhhhh.....hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh....hhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g8l A  16 SSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTCGDLVMTARRNYDHSLVKVLLSHGA 325
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165|      177       187       197       207       217       227       237       247       257       267       277       287       297 ||    308       318       
                                                                                                                                                                               165|                                                                                                                                299|                        
                                                                                                                                                                                168                                                                                                                                 301                        


Chain B from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh....hhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhh......hhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g8l B  21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTGDLVMTARRNYDHSLVKVLLSHGA 325
                                    30        40        50        60        70        80        90       100       110       120       130       140       150    || 169       179       189       199       209       219       229       239       249       259       269       279       289       299|      311       321    
                                                                                                                                                                155|                                                                                                                                   299|                       
                                                                                                                                                                 165                                                                                                                                    302                       


Chain C from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh....hhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhh......hhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g8l C  15 SSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDLVMTARRNYDHSLVKVLLSHGA 325
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154   ||  172       182       192       202       212       222       232       242       252       262       272       282       292      |305       315       325
                                                                                                                                                                         158|                                                                                                                                 299|                      
                                                                                                                                                                          167                                                                                                                                  303                      


Chain D from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh....hhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhh......hhhhhhhhh.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g8l D  21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTGDLVMTARRNYDHSLVKVLLSHGA 325
                                    30        40        50        60        70        80        90       100       110       120       130       140       150      |169       179       189       199       209       219       229       239       249       259       269       279       289       299|      311       321    
                                                                                                                                                                  157|                                                                                                                                 299|                       
                                                                                                                                                                   167                                                                                                                                  302
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G8L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G8L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G8L)

(-) Gene Ontology  (32, 32)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        RN5A_HUMAN | Q05823: 1wdy 4g8k 4oau 4oav

(-) Related Entries Specified in the PDB File

4g8k