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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ALDEHYDE DEHYDROGENASE FROM BURKHOLDERIA CENOCEPACIA
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  23 Dec 13  (Deposition) - 22 Jan 14  (Release) - 22 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Dranow, J. Abendroth, T. E. Edwards, D. Lorimer
Crystal Structure Of A Putative Aldehyde Dehydrogenase From Burkholderia Cenocepacia
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALDEHYDE DEHYDROGENASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BCAM0469
    Organism Scientific: BURKHOLDERIA CENOCEPACIA
    Organism Taxid: 216591
    Strain: ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 25)

Asymmetric/Biological Unit (4, 25)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2EDO9Ligand/Ion1,2-ETHANEDIOL
3GOL4Ligand/IonGLYCEROL
4NO38Ligand/IonNITRATE ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:145 , VAL A:146 , LYS A:172 , GLU A:175 , GLY A:205 , GLY A:209 , GLN A:210 , PHE A:223 , THR A:224 , GLY A:225 , SER A:226 , THR A:229 , ARG A:232 , ILE A:233 , HOH A:902BINDING SITE FOR RESIDUE AMP A 501
02AC2SOFTWAREARG A:104 , PHE A:150 , HIS A:275 , ALA A:280 , ILE A:282 , LYS A:440BINDING SITE FOR RESIDUE NO3 A 502
03AC3SOFTWAREHOH A:787 , HOH A:905BINDING SITE FOR RESIDUE EDO A 503
04AC4SOFTWAREASP A:263 , ASN A:267 , ARG A:300 , HOH A:732 , HOH A:1026 , HOH A:1039 , HOH A:1135 , HOH A:1136BINDING SITE FOR RESIDUE GOL A 504
05AC5SOFTWAREVAL A:126 , ASP A:127 , PHE A:130 , TRP A:475 , HOH A:897 , ARG C:441 , VAL C:442 , EDO C:507BINDING SITE FOR RESIDUE NO3 A 505
06AC6SOFTWAREILE B:145 , VAL B:146 , LYS B:172 , GLU B:175 , GLY B:205 , GLY B:209 , GLN B:210 , PHE B:223 , THR B:224 , GLY B:225 , SER B:226 , THR B:229 , ARG B:232 , HOH B:881BINDING SITE FOR RESIDUE AMP B 501
07AC7SOFTWAREARG B:104 , PHE B:150 , HIS B:275 , ALA B:280 , ILE B:282 , LYS B:440BINDING SITE FOR RESIDUE NO3 B 502
08AC8SOFTWAREASP B:263 , ASN B:267 , ARG B:300 , HOH B:749 , HOH B:796 , HOH B:1146 , HOH B:1147 , ARG D:488BINDING SITE FOR RESIDUE GOL B 503
09AC9SOFTWAREVAL B:126 , ASP B:127 , PHE B:130 , TRP B:475 , HOH B:941 , ARG D:441 , VAL D:442 , ASN D:443 , EDO D:507BINDING SITE FOR RESIDUE NO3 B 504
10BC1SOFTWAREARG A:441 , VAL A:442 , VAL C:126 , ASP C:127 , PHE C:130 , TRP C:475 , HOH C:722 , HOH C:819BINDING SITE FOR RESIDUE NO3 C 501
11BC2SOFTWAREILE C:145 , VAL C:146 , LYS C:172 , SER C:174 , GLU C:175 , GLY C:205 , GLY C:209 , GLN C:210 , PHE C:223 , GLY C:225 , SER C:226 , THR C:229 , ARG C:232 , HOH C:895 , HOH C:1124 , HOH C:1125BINDING SITE FOR RESIDUE AMP C 502
12BC3SOFTWAREARG C:104 , PHE C:150 , HIS C:275 , ALA C:280 , ILE C:282 , LYS C:440BINDING SITE FOR RESIDUE NO3 C 503
13BC4SOFTWARELYS C:372 , LEU C:391 , ARG C:392 , HOH C:871 , HOH C:902BINDING SITE FOR RESIDUE EDO C 504
14BC5SOFTWAREALA C:374 , THR C:375 , ALA C:401 , HOH C:884BINDING SITE FOR RESIDUE EDO C 505
15BC6SOFTWAREHOH C:982BINDING SITE FOR RESIDUE EDO C 506
16BC7SOFTWARENO3 A:505 , ARG C:104 , LYS C:440 , ARG C:441 , VAL C:442 , HOH C:733 , HOH C:927 , HOH C:1086BINDING SITE FOR RESIDUE EDO C 507
17BC8SOFTWAREHOH A:651 , ASP C:263 , ASN C:267 , ARG C:300 , HOH C:838 , HOH C:1141BINDING SITE FOR RESIDUE GOL C 508
18BC9SOFTWAREARG B:441 , VAL B:442 , ASN B:443 , VAL D:126 , ASP D:127 , PHE D:130 , TRP D:475 , HOH D:737 , HOH D:743BINDING SITE FOR RESIDUE NO3 D 501
19CC1SOFTWAREILE D:145 , VAL D:146 , LYS D:172 , SER D:174 , GLU D:175 , GLY D:205 , GLY D:209 , GLN D:210 , PHE D:223 , GLY D:225 , SER D:226 , THR D:229 , HOH D:876 , HOH D:1102 , HOH D:1114 , HOH D:1122 , HOH D:1123 , HOH D:1124BINDING SITE FOR RESIDUE AMP D 502
20CC2SOFTWAREARG D:104 , PHE D:150 , HIS D:275 , ALA D:280 , ILE D:282 , LYS D:440BINDING SITE FOR RESIDUE NO3 D 503
21CC3SOFTWARELYS D:372 , LEU D:391 , ARG D:392 , HOH D:808 , HOH D:874 , HOH D:1081BINDING SITE FOR RESIDUE EDO D 504
22CC4SOFTWARETHR D:375 , HOH D:829BINDING SITE FOR RESIDUE EDO D 505
23CC5SOFTWAREHOH D:908BINDING SITE FOR RESIDUE EDO D 506
24CC6SOFTWARENO3 B:504 , ARG D:104 , TRP D:271 , LYS D:440 , ARG D:441 , VAL D:442 , HOH D:917 , HOH D:1027BINDING SITE FOR RESIDUE EDO D 507
25CC7SOFTWAREHOH B:674 , ASP D:263 , ASN D:267 , ARG D:300 , HOH D:822 , HOH D:1137BINDING SITE FOR RESIDUE GOL D 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O6R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O6R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O6R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O6R)

(-) Exons   (0, 0)

(no "Exon" information available for 4O6R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4o6ra_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee......eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhh....eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh..eeee......hhhhh.......eeee.....hhhhhh.....eeeeeee.hhhhhhhhhh........eee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhhheeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6r A   0 HMQTQLFIDGRFVDAVDRGTIDVLNPHDGSVITKIAAATAADVDLAVDAATRAFPAWSAMPAAERGRLLLRLADAIEANTEALAQLESLDTGHPIRDSRALDVPRTAACFRYFGGMADKLQGSVIPVDTGFLNYVQRAPIGVVGQIVPWNFPLMFTSWKMGPALAAGNTVVLKPSEITPLSTLRIVELMAEVGFPAGVVNIVPGYGHTAGQRLAEHPGVGKIAFTGSTATGRRIVEASQGNLKRVQLELGGKGANIVFDDANLDAAINGAAWAIFHNQGQACIAGSRLVLHERIADAFLERFVALASSIRIGNPLDPNTEMGPLTSKQHLDRVLSYVDVAREQGGRVLTGGSAPQDPALANGYYVRPTIVEAKHATDRVAQEEVFGPFVTVLRFGSDDEALAIANATEYGLGSGLWTNDLSRAHRMAARIDAGMCWINCYKRVNPGSPFGGVGKSGYGREMGFEAMHDYTEARSVWVNVDGNVPPHFKR 488
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479         


Chain B from PDB  Type:PROTEIN  Length:489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4o6rb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh....eee......eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhh....eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh..eeee......hhhhh.......eeee.....hhhhhh.....eeeeeee.hhhhhhhhhh......eeeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhhheeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6r B   0 HMQTQLFIDGRFVDAVDRGTIDVLNPHDGSVITKIAAATAADVDLAVDAATRAFPAWSAMPAAERGRLLLRLADAIEANTEALAQLESLDTGHPIRDSRALDVPRTAACFRYFGGMADKLQGSVIPVDTGFLNYVQRAPIGVVGQIVPWNFPLMFTSWKMGPALAAGNTVVLKPSEITPLSTLRIVELMAEVGFPAGVVNIVPGYGHTAGQRLAEHPGVGKIAFTGSTATGRRIVEASQGNLKRVQLELGGKGANIVFDDANLDAAINGAAWAIFHNQGQACIAGSRLVLHERIADAFLERFVALASSIRIGNPLDPNTEMGPLTSKQHLDRVLSYVDVAREQGGRVLTGGSAPQDPALANGYYVRPTIVEAKHATDRVAQEEVFGPFVTVLRFGSDDEALAIANATEYGLGSGLWTNDLSRAHRMAARIDAGMCWINCYKRVNPGSPFGGVGKSGYGREMGFEAMHDYTEARSVWVNVDGNVPPHFKR 488
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479         


Chain C from PDB  Type:PROTEIN  Length:489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4o6rc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh....eeee.....eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhh....eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh..eeee......hhhhh.......eeee.....hhhhhh.....eeeeeee.hhhhhhhhhh........eee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhhheeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6r C   0 HMQTQLFIDGRFVDAVDRGTIDVLNPHDGSVITKIAAATAADVDLAVDAATRAFPAWSAMPAAERGRLLLRLADAIEANTEALAQLESLDTGHPIRDSRALDVPRTAACFRYFGGMADKLQGSVIPVDTGFLNYVQRAPIGVVGQIVPWNFPLMFTSWKMGPALAAGNTVVLKPSEITPLSTLRIVELMAEVGFPAGVVNIVPGYGHTAGQRLAEHPGVGKIAFTGSTATGRRIVEASQGNLKRVQLELGGKGANIVFDDANLDAAINGAAWAIFHNQGQACIAGSRLVLHERIADAFLERFVALASSIRIGNPLDPNTEMGPLTSKQHLDRVLSYVDVAREQGGRVLTGGSAPQDPALANGYYVRPTIVEAKHATDRVAQEEVFGPFVTVLRFGSDDEALAIANATEYGLGSGLWTNDLSRAHRMAARIDAGMCWINCYKRVNPGSPFGGVGKSGYGREMGFEAMHDYTEARSVWVNVDGNVPPHFKR 488
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479         


Chain D from PDB  Type:PROTEIN  Length:489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4o6rd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.....eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhh....eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh..eeee......hhhhh.......eeee.....hhhhhh.....eeeeeee.hhhhhhhhhh.......eeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhhheeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6r D   0 HMQTQLFIDGRFVDAVDRGTIDVLNPHDGSVITKIAAATAADVDLAVDAATRAFPAWSAMPAAERGRLLLRLADAIEANTEALAQLESLDTGHPIRDSRALDVPRTAACFRYFGGMADKLQGSVIPVDTGFLNYVQRAPIGVVGQIVPWNFPLMFTSWKMGPALAAGNTVVLKPSEITPLSTLRIVELMAEVGFPAGVVNIVPGYGHTAGQRLAEHPGVGKIAFTGSTATGRRIVEASQGNLKRVQLELGGKGANIVFDDANLDAAINGAAWAIFHNQGQACIAGSRLVLHERIADAFLERFVALASSIRIGNPLDPNTEMGPLTSKQHLDRVLSYVDVAREQGGRVLTGGSAPQDPALANGYYVRPTIVEAKHATDRVAQEEVFGPFVTVLRFGSDDEALAIANATEYGLGSGLWTNDLSRAHRMAARIDAGMCWINCYKRVNPGSPFGGVGKSGYGREMGFEAMHDYTEARSVWVNVDGNVPPHFKR 488
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O6R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O6R)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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