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4O6R
Asym. Unit
Info
Asym.Unit (646 KB)
Biol.Unit 1 (636 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE ALDEHYDE DEHYDROGENASE FROM BURKHOLDERIA CENOCEPACIA
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
23 Dec 13 (Deposition) - 22 Jan 14 (Release) - 22 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Dranow, J. Abendroth, T. E. Edwards, D. Lorimer
Crystal Structure Of A Putative Aldehyde Dehydrogenase From Burkholderia Cenocepacia
To Be Published
[
close entry info
]
Hetero Components
(4, 25)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: NITRATE ION (NO3a)
4b: NITRATE ION (NO3b)
4c: NITRATE ION (NO3c)
4d: NITRATE ION (NO3d)
4e: NITRATE ION (NO3e)
4f: NITRATE ION (NO3f)
4g: NITRATE ION (NO3g)
4h: NITRATE ION (NO3h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
4
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
4
Ligand/Ion
GLYCEROL
4
NO3
8
Ligand/Ion
NITRATE ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:145 , VAL A:146 , LYS A:172 , GLU A:175 , GLY A:205 , GLY A:209 , GLN A:210 , PHE A:223 , THR A:224 , GLY A:225 , SER A:226 , THR A:229 , ARG A:232 , ILE A:233 , HOH A:902
BINDING SITE FOR RESIDUE AMP A 501
02
AC2
SOFTWARE
ARG A:104 , PHE A:150 , HIS A:275 , ALA A:280 , ILE A:282 , LYS A:440
BINDING SITE FOR RESIDUE NO3 A 502
03
AC3
SOFTWARE
HOH A:787 , HOH A:905
BINDING SITE FOR RESIDUE EDO A 503
04
AC4
SOFTWARE
ASP A:263 , ASN A:267 , ARG A:300 , HOH A:732 , HOH A:1026 , HOH A:1039 , HOH A:1135 , HOH A:1136
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
VAL A:126 , ASP A:127 , PHE A:130 , TRP A:475 , HOH A:897 , ARG C:441 , VAL C:442 , EDO C:507
BINDING SITE FOR RESIDUE NO3 A 505
06
AC6
SOFTWARE
ILE B:145 , VAL B:146 , LYS B:172 , GLU B:175 , GLY B:205 , GLY B:209 , GLN B:210 , PHE B:223 , THR B:224 , GLY B:225 , SER B:226 , THR B:229 , ARG B:232 , HOH B:881
BINDING SITE FOR RESIDUE AMP B 501
07
AC7
SOFTWARE
ARG B:104 , PHE B:150 , HIS B:275 , ALA B:280 , ILE B:282 , LYS B:440
BINDING SITE FOR RESIDUE NO3 B 502
08
AC8
SOFTWARE
ASP B:263 , ASN B:267 , ARG B:300 , HOH B:749 , HOH B:796 , HOH B:1146 , HOH B:1147 , ARG D:488
BINDING SITE FOR RESIDUE GOL B 503
09
AC9
SOFTWARE
VAL B:126 , ASP B:127 , PHE B:130 , TRP B:475 , HOH B:941 , ARG D:441 , VAL D:442 , ASN D:443 , EDO D:507
BINDING SITE FOR RESIDUE NO3 B 504
10
BC1
SOFTWARE
ARG A:441 , VAL A:442 , VAL C:126 , ASP C:127 , PHE C:130 , TRP C:475 , HOH C:722 , HOH C:819
BINDING SITE FOR RESIDUE NO3 C 501
11
BC2
SOFTWARE
ILE C:145 , VAL C:146 , LYS C:172 , SER C:174 , GLU C:175 , GLY C:205 , GLY C:209 , GLN C:210 , PHE C:223 , GLY C:225 , SER C:226 , THR C:229 , ARG C:232 , HOH C:895 , HOH C:1124 , HOH C:1125
BINDING SITE FOR RESIDUE AMP C 502
12
BC3
SOFTWARE
ARG C:104 , PHE C:150 , HIS C:275 , ALA C:280 , ILE C:282 , LYS C:440
BINDING SITE FOR RESIDUE NO3 C 503
13
BC4
SOFTWARE
LYS C:372 , LEU C:391 , ARG C:392 , HOH C:871 , HOH C:902
BINDING SITE FOR RESIDUE EDO C 504
14
BC5
SOFTWARE
ALA C:374 , THR C:375 , ALA C:401 , HOH C:884
BINDING SITE FOR RESIDUE EDO C 505
15
BC6
SOFTWARE
HOH C:982
BINDING SITE FOR RESIDUE EDO C 506
16
BC7
SOFTWARE
NO3 A:505 , ARG C:104 , LYS C:440 , ARG C:441 , VAL C:442 , HOH C:733 , HOH C:927 , HOH C:1086
BINDING SITE FOR RESIDUE EDO C 507
17
BC8
SOFTWARE
HOH A:651 , ASP C:263 , ASN C:267 , ARG C:300 , HOH C:838 , HOH C:1141
BINDING SITE FOR RESIDUE GOL C 508
18
BC9
SOFTWARE
ARG B:441 , VAL B:442 , ASN B:443 , VAL D:126 , ASP D:127 , PHE D:130 , TRP D:475 , HOH D:737 , HOH D:743
BINDING SITE FOR RESIDUE NO3 D 501
19
CC1
SOFTWARE
ILE D:145 , VAL D:146 , LYS D:172 , SER D:174 , GLU D:175 , GLY D:205 , GLY D:209 , GLN D:210 , PHE D:223 , GLY D:225 , SER D:226 , THR D:229 , HOH D:876 , HOH D:1102 , HOH D:1114 , HOH D:1122 , HOH D:1123 , HOH D:1124
BINDING SITE FOR RESIDUE AMP D 502
20
CC2
SOFTWARE
ARG D:104 , PHE D:150 , HIS D:275 , ALA D:280 , ILE D:282 , LYS D:440
BINDING SITE FOR RESIDUE NO3 D 503
21
CC3
SOFTWARE
LYS D:372 , LEU D:391 , ARG D:392 , HOH D:808 , HOH D:874 , HOH D:1081
BINDING SITE FOR RESIDUE EDO D 504
22
CC4
SOFTWARE
THR D:375 , HOH D:829
BINDING SITE FOR RESIDUE EDO D 505
23
CC5
SOFTWARE
HOH D:908
BINDING SITE FOR RESIDUE EDO D 506
24
CC6
SOFTWARE
NO3 B:504 , ARG D:104 , TRP D:271 , LYS D:440 , ARG D:441 , VAL D:442 , HOH D:917 , HOH D:1027
BINDING SITE FOR RESIDUE EDO D 507
25
CC7
SOFTWARE
HOH B:674 , ASP D:263 , ASN D:267 , ARG D:300 , HOH D:822 , HOH D:1137
BINDING SITE FOR RESIDUE GOL D 508
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4o6ra_ (A:)
1b: SCOP_d4o6rc_ (C:)
1c: SCOP_d4o6rd_ (D:)
1d: SCOP_d4o6rb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Burkholderia cenocepacia [TaxId: 216591]
(3)
1a
d4o6ra_
A:
1b
d4o6rc_
C:
1c
d4o6rd_
D:
1d
d4o6rb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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Chain D
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select residue range 5 to 10 in chain 'A'
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