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(-) Description

Title :  DNA DOUBLE-STRAND BREAK REPAIR PATHWAY CHOICE IS DIRECTED BY DISTINCT MRE11 NUCLEASE ACTIVITIES
 
Authors :  A. Shibata, D. Moiani, A. S. Arvai, J. Perry, S. M. Harding, M. Genois, R. S. Rossum-Fikkert, A. Kertokalio, F. Romoli, A. Ismail, E. Ismalaj, E. Petricci, M. J. Neale, R. G. Bristow, J. Masson, C. Wyman, P. A. Jeggo J. A. Tainer
Date :  12 Dec 13  (Deposition) - 08 Jan 14  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Repair Mre11 Thermophilic Nuclease, Dna Double-Strand Break Repair, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Shibata, D. Moiani, A. S. Arvai, J. Perry, S. M. Harding, M. M. Genois R. Maity, S. Van Rossum-Fikkert, A. Kertokalio, F. Romoli, A. Ismail E. Ismalaj, E. Petricci, M. J. Neale, R. G. Bristow, J. Y. Masson, C. Wyman, P. A. Jeggo, J. A. Tainer
Dna Double-Strand Break Repair Pathway Choice Is Directed B Distinct Mre11 Nuclease Activities.
Mol. Cell V. 53 7 2014
PubMed-ID: 24316220  |  Reference-DOI: 10.1016/J.MOLCEL.2013.11.003

(-) Compounds

Molecule 1 - EXONUCLEASE, PUTATIVE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TM_1635
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MN4Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:58 , HIS A:180 , HIS A:216 , HOH A:504BINDING SITE FOR RESIDUE MN A 401
2AC2SOFTWAREASP A:14 , HIS A:16 , ASP A:58 , HIS A:216 , HIS A:218BINDING SITE FOR RESIDUE MN A 402
3AC3SOFTWAREASP B:58 , ASN B:93 , HIS B:180 , HIS B:216BINDING SITE FOR RESIDUE MN B 401
4AC4SOFTWAREASP B:14 , HIS B:16 , ASP B:58 , HIS B:216 , HIS B:218 , HOH B:620BINDING SITE FOR RESIDUE MN B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NZV)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Gln A:226 -Pro A:227
2Val B:1 -Ile B:2
3Glu B:142 -Ser B:143
4Ala B:190 -Gly B:191
5Ile B:192 -Glu B:193
6Gln B:194 -Gly B:195
7Gln B:226 -Pro B:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NZV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NZV)

(-) Exons   (0, 0)

(no "Exon" information available for 4NZV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeee.......ee......eehhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhhhhhhhhh.eee.......hhhhhhhhhhhhhh..eee......eeee.....eeeeeee...........hhhhhhhhhhhhhhhhhhhhh....eeeeeee.ee...............eehhhhh.....eeeee.....eeee....eee................eeeeeeee..eeeeeeeee.....eeeeeeee.hhhhhhhhhhhhhh...eeeeeeee......hhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nzv A  -4 HHHHHVINLKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKLFGNFVTSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIHSFREIQKQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGEPPRYERIDASPLPLKTLYYKKIDTSALKSIRDFCRNFPGYVRVVYEEDSGILPDLMGEIDNLVKIE 324
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315         


Chain B from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeee.......ee......eehhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhhhhhhhhh.eee.......hhhhhhhhhhhhhh..eee......eeee.....eeeeeee........hhhhhhhhhhhhhhhhhhhhh....eeeeeee.ee...............eehhhhh.....eeeee.....eeee...eeee................eeeeeeee.....eeeeee.....eeeeeeee.hhhhhhhhhhhhhh...eeeeeeee......hhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nzv B  -2 HHHVINLKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKLFGNFVTSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIHSFREIQKQPLTIYPGSLIRIDFGEEADEKGAVFVELKRGEPPRYERIDASPLPLKTLYYKKIDTSALKSIRDFCRNFPGYVRVVYEEDSGILPDLMGEIDNLVKIE 324
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137      |150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320    
                                                                                                                                                                            144|                                                                                                                                                                                
                                                                                                                                                                             148
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NZV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NZV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NZV)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala B:190 - Gly B:191   [ RasMol ]  
    Gln A:226 - Pro A:227   [ RasMol ]  
    Gln B:194 - Gly B:195   [ RasMol ]  
    Gln B:226 - Pro B:227   [ RasMol ]  
    Glu B:142 - Ser B:143   [ RasMol ]  
    Ile B:192 - Glu B:193   [ RasMol ]  
    Val B:1 - Ile B:2   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9X1X0_THEMA | Q9X1X0: 2q8u 3qf7 3qg5 3thn 3tho 4o24 4o43 4o4k 4o5g 4w9m

(-) Related Entries Specified in the PDB File

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