Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF VIBRIO CHOLERAE CHITIN DE-N-ACETYLASE IN COMPLEX WITH ACETATE ION (ACT) IN P 2 21 21
 
Authors :  D. Albesa-Jove, E. Andres, X. Biarnes, A. Planas, M. E. Guerin
Date :  11 Dec 13  (Deposition) - 13 Aug 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  (Beta/Alpha)7, Carbohydrate Esterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Andres, D. Albesa-Jove, X. Biarnes, B. M. Moerschbacher, M. E. Guerin, A. Planas
Structural Basis Of Chitin Oligosaccharide Deacetylation.
Angew. Chem. Int. Ed. Engl. V. 53 6882 2014
PubMed-ID: 24810719  |  Reference-DOI: 10.1002/ANIE.201400220

(-) Compounds

Molecule 1 - DEACETYLASE DA1
    Chains: A, B, C, D
    EC Number: 3.5.1.41
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINAL DOMAIN, UNP RESIDUES 23-427
    Gene: DEAA, VCNHCC010F_001593
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 1095658

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric Unit (4, 17)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2EDO5Ligand/Ion1,2-ETHANEDIOL
3NA4Ligand/IonSODIUM ION
4ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
3NA-1Ligand/IonSODIUM ION
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3NA-1Ligand/IonSODIUM ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:40 , HIS A:97 , HIS A:101 , ACT A:503BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREGLY A:223 , GLY A:355 , HOH A:651 , HOH A:671 , HOH A:672 , HOH A:678BINDING SITE FOR RESIDUE NA A 502
03AC3SOFTWAREASP A:39 , HIS A:97 , HIS A:101 , PRO A:168 , TYR A:169 , HIS A:295 , ZN A:501BINDING SITE FOR RESIDUE ACT A 503
04AC4SOFTWAREASP A:40 , HIS A:101 , HOH A:657 , HOH A:679 , HOH A:680BINDING SITE FOR RESIDUE EDO A 504
05AC5SOFTWAREILE A:218 , ASN A:221 , ASN A:387 , PRO B:151 , ARG B:154 , SER B:155BINDING SITE FOR RESIDUE EDO A 505
06AC6SOFTWAREASP B:40 , HIS B:97 , HIS B:101 , ACT B:503BINDING SITE FOR RESIDUE ZN B 501
07AC7SOFTWAREGLY B:223 , GLY B:355 , HOH B:658 , HOH B:659 , HOH B:660 , HOH B:661BINDING SITE FOR RESIDUE NA B 502
08AC8SOFTWAREASP B:39 , ASP B:40 , HIS B:97 , HIS B:101 , PRO B:168 , TYR B:169 , HIS B:295 , ZN B:501 , HOH B:601BINDING SITE FOR RESIDUE ACT B 503
09AC9SOFTWAREASP B:40 , HOH B:666BINDING SITE FOR RESIDUE EDO B 504
10BC1SOFTWAREGLU B:140 , TYR B:162 , GLN B:222BINDING SITE FOR RESIDUE EDO B 505
11BC2SOFTWAREASP C:40 , HIS C:97 , HIS C:101 , ACT C:503BINDING SITE FOR RESIDUE ZN C 501
12BC3SOFTWAREGLY C:223 , GLY C:355 , HOH C:643 , HOH C:644 , HOH C:645BINDING SITE FOR RESIDUE NA C 502
13BC4SOFTWAREASP C:39 , ASP C:40 , HIS C:97 , HIS C:101 , PRO C:168 , TYR C:169 , HIS C:295 , ZN C:501BINDING SITE FOR RESIDUE ACT C 503
14BC5SOFTWAREASP C:40 , HOH C:649BINDING SITE FOR RESIDUE EDO C 504
15BC6SOFTWAREASP D:40 , HIS D:97 , HIS D:101 , ACT D:503BINDING SITE FOR RESIDUE ZN D 501
16BC7SOFTWAREGLY D:223 , GLY D:355 , HOH D:612 , HOH D:635 , HOH D:649 , HOH D:651BINDING SITE FOR RESIDUE NA D 502
17BC8SOFTWAREASP D:39 , ASP D:40 , HIS D:97 , HIS D:101 , PRO D:168 , TYR D:169 , HIS D:295 , ZN D:501BINDING SITE FOR RESIDUE ACT D 503

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:106 -A:118
2A:185 -A:200
3A:264 -A:281
4B:106 -B:118
5B:185 -B:200
6B:264 -B:281
7C:106 -C:118
8C:185 -C:200
9C:264 -C:281
10D:106 -D:118
11D:185 -D:200
12D:264 -D:281

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:41 -Pro A:42
2Glu A:270 -Pro A:271
3Gly B:41 -Pro B:42
4Glu B:270 -Pro B:271
5Gly C:41 -Pro C:42
6Glu C:270 -Pro C:271
7Gly D:41 -Pro D:42
8Glu D:270 -Pro D:271

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NYY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NYY)

(-) Exons   (0, 0)

(no "Exon" information available for 4NYY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee...hhhhhhhhhhhh....eeee.hhhh.........hhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhh.......ee.......eeee..eee........................hhhhhhhhhhhhhhhhh..ee....ee.........hhhhhh.hhhhhhhhhhhhh..hhhhhh.hhhhh.......hhhhh.eeeeeee.hhh.ee..eehhhhhhhhhhhhhhhhhhhheee.hhhhh........ee....eeee..eeeee...ee.............eee...........ee....eeee..eeeee...ee.............eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nyy A  29 TPKGTIYLTFDDGPVNASVEVIKVLNQGGVKATFYFNAWHLDGIGDENEDRALEALKLALDSGHIVGNHSYDHMIHNCVEEFGPTSGADCNATGNHQIHSYQDPVRDAASFEQNLITLEKYLPTIRSYPNYKGYELARLPYTNGWRVTKHFQADGLCATSDNLKPWEPGYVCDPANPSNSVKASIQVQNILANQGYQTHGWDVDWAPENWGIPMPANSLTEAVPFLAYVDKALNSCSPTTIEPINSKTQEFPCGTPLHADKVIVLTHDFLFEDGKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQAGEYVLYQGVVYKAVISHTAQQDWAPSSTSSLWTNADPATNWTLNVSYEQGDIVNYKGKRYLVSVPHVSQQDWTPDTQNTLFTALEL 433
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428     


Chain B from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeee...hhhhhhhhhhhhh...eeee.hhhh.........hhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhh.......ee.......eeee..eee........................hhhhhhhhhhhhhhhhh..ee....ee.........hhhhhh.hhhhhhhhhhhhh..hhhhhh.hhhhh.......hhhhh.eeeeeee.hhh.ee..eehhhhhhhhhhhhhhhhhhhheee.hhhhh........ee....eeee..eeeee...ee.............eee...........ee....eeee..eeeee...ee.............eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nyy B  28 STPKGTIYLTFDDGPVNASVEVIKVLNQGGVKATFYFNAWHLDGIGDENEDRALEALKLALDSGHIVGNHSYDHMIHNCVEEFGPTSGADCNATGNHQIHSYQDPVRDAASFEQNLITLEKYLPTIRSYPNYKGYELARLPYTNGWRVTKHFQADGLCATSDNLKPWEPGYVCDPANPSNSVKASIQVQNILANQGYQTHGWDVDWAPENWGIPMPANSLTEAVPFLAYVDKALNSCSPTTIEPINSKTQEFPCGTPLHADKVIVLTHDFLFEDGKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQAGEYVLYQGVVYKAVISHTAQQDWAPSSTSSLWTNADPATNWTLNVSYEQGDIVNYKGKRYLVSVPHVSQQDWTPDTQNTLFTALE 432
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427     


Chain C from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee...hhhhhhhhhhhh....eeee.hhhh.........hhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhh.......ee.......eeee..eee........................hhhhhhhhhhhhhhhhh..ee....ee.........hhhhhh.hhhhhhhhhhhhh..hhhhhh.hhhhh.......hhhhh.eeeeeee.hhh.ee..eehhhhhhhhhhhhhhhhhhhheee.hhhhh........ee....eeee..eeeee...ee.............eee...........ee....eeee..eeeee...ee.............eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nyy C  29 TPKGTIYLTFDDGPVNASVEVIKVLNQGGVKATFYFNAWHLDGIGDENEDRALEALKLALDSGHIVGNHSYDHMIHNCVEEFGPTSGADCNATGNHQIHSYQDPVRDAASFEQNLITLEKYLPTIRSYPNYKGYELARLPYTNGWRVTKHFQADGLCATSDNLKPWEPGYVCDPANPSNSVKASIQVQNILANQGYQTHGWDVDWAPENWGIPMPANSLTEAVPFLAYVDKALNSCSPTTIEPINSKTQEFPCGTPLHADKVIVLTHDFLFEDGKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQAGEYVLYQGVVYKAVISHTAQQDWAPSSTSSLWTNADPATNWTLNVSYEQGDIVNYKGKRYLVSVPHVSQQDWTPDTQNTLFTALE 432
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428    


Chain D from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhhhhhhhhhh....eeee.hhhh.........hhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhh.......ee.......eeee..eee........................hhhhhhhhhhhhhhhhh..ee....ee.........hhhhhh.hhhhhhhhhhhhh..hhhhhh.hhhhh.......hhhhh.eeeeeee.hhh.ee..eehhhhhhhhhhhhhhhhhhhheee..............ee....eeee..eeeee...ee.............eee...........ee....eeee..eeeee...ee.............eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nyy D  29 TPKGTIYLTFDDGPVNASVEVIKVLNQGGVKATFYFNAWHLDGIGDENEDRALEALKLALDSGHIVGNHSYDHMIHNCVEEFGPTSGADCNATGNHQIHSYQDPVRDAASFEQNLITLEKYLPTIRSYPNYKGYELARLPYTNGWRVTKHFQADGLCATSDNLKPWEPGYVCDPANPSNSVKASIQVQNILANQGYQTHGWDVDWAPENWGIPMPANSLTEAVPFLAYVDKALNSCSPTTIEPINSKTQEFPCGTPLHADKVIVLTHDFLFEDGKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQAGEYVLYQGVVYKAVISHTAQQDWAPSSTSSLWTNADPATNWTLNVSYEQGDIVNYKGKRYLVSVPHVSQQDWTPDTQNTLFTALEL 433
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NYY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NYY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NYY)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4NYY)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:270 - Pro A:271   [ RasMol ]  
    Glu B:270 - Pro B:271   [ RasMol ]  
    Glu C:270 - Pro C:271   [ RasMol ]  
    Glu D:270 - Pro D:271   [ RasMol ]  
    Gly A:41 - Pro A:42   [ RasMol ]  
    Gly B:41 - Pro B:42   [ RasMol ]  
    Gly C:41 - Pro C:42   [ RasMol ]  
    Gly D:41 - Pro D:42   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4nyy
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProt
 
Access by Enzyme Classificator   (EC Number)
  3.5.1.41
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  (no 'UniProt ID/Accession number' available) |
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4NYY)

(-) Related Entries Specified in the PDB File

4ny2 4nyu 4nz1 4nz3 4nz4 4nz5