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(-) Description

Title :  STRUCTURE OF VIBRIO CHOLERAE CHITIN DE-N-ACETYLASE IN COMPLEX WITH ACETATE ION (ACT) IN C 2 2 21
 
Authors :  D. Albesa-Jove, E. Andres, X. Biarnes, A. Planas, M. E. Guerin
Date :  11 Dec 13  (Deposition) - 13 Aug 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.03
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  (Beta/Alpha)7, Carbohydrate Esterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Andres, D. Albesa-Jove, X. Biarnes, B. M. Moerschbacher, M. E. Guerin, A. Planas
Structural Basis Of Chitin Oligosaccharide Deacetylation.
Angew. Chem. Int. Ed. Engl. V. 53 6882 2014
PubMed-ID: 24810719  |  Reference-DOI: 10.1002/ANIE.201400220

(-) Compounds

Molecule 1 - DEACETYLASE DA1
    Chains: A
    EC Number: 3.5.1.41
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINAL DOMAIN, UNP RESIDUES 23-427
    Gene: DEAA, VCNHCC010F_001593
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 1095658

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3GOL9Ligand/IonGLYCEROL
4ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3GOL18Ligand/IonGLYCEROL
4ZN-1Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:40 , HIS A:97 , HIS A:101 , ACT A:503 , HOH A:601BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREGLY A:223 , GLY A:355 , HOH A:602 , HOH A:603 , HOH A:604 , HOH A:605BINDING SITE FOR RESIDUE CA A 502
03AC3SOFTWAREASP A:39 , ASP A:40 , HIS A:97 , HIS A:101 , PRO A:168 , TYR A:169 , HIS A:295 , ZN A:501 , GOL A:505 , HOH A:601BINDING SITE FOR RESIDUE ACT A 503
04AC4SOFTWAREASP A:230 , VAL A:231 , TYR A:256 , LYS A:259 , HOH A:651 , HOH A:784BINDING SITE FOR RESIDUE GOL A 504
05AC5SOFTWARETYR A:169 , ASP A:232 , LEU A:293 , HIS A:295 , ACT A:503 , HOH A:684BINDING SITE FOR RESIDUE GOL A 505
06AC6SOFTWAREASP A:288BINDING SITE FOR RESIDUE GOL A 507
07AC7SOFTWAREASN A:237 , SER A:246 , HOH A:629BINDING SITE FOR RESIDUE GOL A 508
08AC8SOFTWAREGLU A:140 , LEU A:143 , ARG A:154 , TYR A:162 , HOH A:674 , HOH A:731 , HOH A:786BINDING SITE FOR RESIDUE GOL A 509
09AC9SOFTWARETHR A:29 , PRO A:30 , LYS A:323 , GLY A:326 , TYR A:327 , VAL A:328 , HOH A:1010BINDING SITE FOR RESIDUE GOL A 510
10BC1SOFTWAREGLN A:417BINDING SITE FOR RESIDUE GOL A 511
11BC2SOFTWAREPRO A:241 , TRP A:370BINDING SITE FOR RESIDUE GOL A 512

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:106 -A:118
2A:185 -A:200
3A:264 -A:281

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:41 -Pro A:42
2Glu A:270 -Pro A:271

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NYU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NYU)

(-) Exons   (0, 0)

(no "Exon" information available for 4NYU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:406
                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....hhhhhhhhhhhhh...eeee.hhhhhh.......hhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhh.......ee.......eeee..eee........................hhhhhhhhhhhhhhhhh..ee....ee.........hhhhhh.hhhhhhhhhhhhh..hhhhhh.hhhhh.......hhhhh.eeeeeee.hhh.ee..eehhhhhhhhhhhhhhhhhhh.eee..............ee....eeee..eeeee...ee.............eee...........ee....eeee..eeeee...ee.............eee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nyu A  29 TPKGTIYLTFDDGPVNASVEVIKVLNQGGVKATFYFNAWHLDGIGDENEDRALEALKLALDSGHIVGNHSYDHMIHNCVEEFGPTSGADCNATGNHQIHSYQDPVRDAASFEQNLITLEKYLPTIRSYPNYKGYELARLPYTNGWRVTKHFQADGLCATSDNLKPWEPGYVCDPANPSNSVKASIQVQNILANQGYQTHGWDVDWAPENWGIPMPANSLTEAVPFLAYVDKALNSCSPTTIEPINSKTQEFPCGTPLHADKVIVLTHDFLFEDGKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQAGEYVLYQGVVYKAVISHTAQQDWAPSSTSSLWTNADPATNWTLNVSYEQGDIVNYKGKRYLVSVPHVSQQDWTPDTQNTLFTALELR 434
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NYU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NYU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NYU)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4NYU)

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  Cis Peptide Bonds
    Glu A:270 - Pro A:271   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4ny2 4nyy 4nz1 4nz3 4nz4 4nz5