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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE MUTASE FROM STAPHYLOCOCCUS AUREUS IN 2-PHOSPHOGLYCERIC ACID BOUND FORM
 
Authors :  A. Roychowdhury, A. Kundu, M. Bose, A. Gujar, A. K. Das
Date :  07 Dec 13  (Deposition) - 14 Jan 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym./Biol. Unit :  A
Keywords :  Isomerase, Glycolytic Enzyme, Cytosol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Roychowdhury, A. Kundu, M. Bose, A. Gujar, S. Mukherjee, A. K. Das
Complete Catalytic Cycle Of Cofactor-Independent Phosphoglycerate Mutase Involves A Spring-Loaded Mechanism
Febs J. V. 282 1097 2015
PubMed-ID: 25611430  |  Reference-DOI: 10.1111/FEBS.13205

(-) Compounds

Molecule 1 - 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
    Chains: A
    EC Number: 5.4.2.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: M15
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GPMI, SAOUHSC_00798
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 93061
    Strain: NCTC8325
    Synonym: BPG-INDEPENDENT PGAM, PHOSPHOGLYCEROMUTASE, IPGM

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
12PG1Ligand/Ion2-PHOSPHOGLYCERIC ACID
2DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE
3MN2Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:123 , ARG A:153 , ASP A:154 , ARG A:185 , ARG A:191 , ARG A:257 , ARG A:260 , HOH A:715 , HOH A:963BINDING SITE FOR RESIDUE 2PG A 601
2AC2SOFTWAREASP A:12 , SER A:62 , ASP A:438 , HIS A:439BINDING SITE FOR RESIDUE MN A 602
3AC3SOFTWAREASP A:397 , HIS A:401 , HIS A:456 , HOH A:1002 , HOH A:1003 , HOH A:1004BINDING SITE FOR RESIDUE MN A 603
4AC4SOFTWAREGLU A:218 , GLU A:239 , ASN A:317 , GLU A:492BINDING SITE FOR RESIDUE DTT A 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NWX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NWX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NWX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NWX)

(-) Exons   (0, 0)

(no "Exon" information available for 4NWX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...........hhhhhh.hhhhhhhhhhh.eeee..hhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhh..eeeeeeehhhhh....hhhhhhhhhhhhh.....ee.hhhhhhhhhhhh..hhhhh..eee...........eeee.......hhhhhhhhhh..............eeee..........ee.........hhhhhhhhh...eeeeee..hhhhhh.............eeeeee......hhhhh...hhhhhhhhhhhhhhhh...eeeeeehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........................eeeee...........hhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nwx A   3 KKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH 505
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NWX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NWX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NWX)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  4nwx
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 Related Entries

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UniProtKB/TrEMBL
        Q2G029_STAA8 | Q2G029: 4my4 4nwj 4qax

(-) Related Entries Specified in the PDB File

4nwj