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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOSPHOPGLYCERATE MUTASE FROM STAPHYLOCOCCUS AUREUS IN 3-PHOSPHOGLYCERIC ACID BOUND FORM.
 
Authors :  A. Roychowdhury, M. Bose, A. Kundu, A. Gujar, A. K. Das
Date :  06 Dec 13  (Deposition) - 14 Jan 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym./Biol. Unit :  A
Keywords :  Isomerase, Glycolytic Enzyme, Cytosol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Roychowdhury, A. Kundu, M. Bose, A. Gujar, S. Mukherjee, A. K. Das
Complete Catalytic Cycle Of Cofactor-Independent Phosphoglycerate Mutase Involves A Spring-Loaded Mechanism
Febs J. V. 282 1097 2015
PubMed-ID: 25611430  |  Reference-DOI: 10.1111/FEBS.13205

(-) Compounds

Molecule 1 - 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
    Chains: A
    EC Number: 5.4.2.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: M15
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GPMI, SAOUHSC_00798
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 93061
    Strain: NCTC8325
    Synonym: BPG-INDEPENDENT PGAM, PHOSPHOGLYCEROMUTASE, IPGM

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
13PG1Ligand/Ion3-PHOSPHOGLYCERIC ACID
2MN2Ligand/IonMANGANESE (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:397 , HIS A:401 , HIS A:456 , HOH A:701 , HOH A:702 , HOH A:767BINDING SITE FOR RESIDUE MN A 601
2AC2SOFTWAREASP A:12 , SER A:62 , ASP A:438 , HIS A:439BINDING SITE FOR RESIDUE MN A 602
3AC3SOFTWAREHIS A:123 , ARG A:153 , ASP A:154 , ARG A:185 , ARG A:191 , ARG A:257 , ARG A:260 , HOH A:972BINDING SITE FOR RESIDUE 3PG A 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NWJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NWJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NWJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NWJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4NWJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:504
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee...........hhhhhh.hhhhhhhhhhh.eeee..hhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhh..eeeeeeehhhhh....hhhhhhhhhhhhh.....ee.hhhhhhhhhhhh..hhhhh..eee...........eeee...hhhhhhhhhhhhhh..............eeee..........ee.........hhhhhhhhh...eeeeee..hhhhhh.............eeeeee......hhhhh...hhhhhhhhhhhhhhhh...eeeeeehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee........................eeeee...........hhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nwj A   2 AKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH 505
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NWJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NWJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NWJ)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2G029_STAA8 | Q2G029: 4my4 4nwx 4qax

(-) Related Entries Specified in the PDB File

4nwx