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(-) Description

Title :  THE C2A DOMAIN OF RABPHILIN 3A IN COMPLEX WITH PI(4,5)P2
 
Authors :  J. Guillen, C. Ferrer-Orta, M. Buxaderas, D. Perez-Sanchez, M. Guerre Valero, G. Luengo-Gil, J. Pous, P. Guerra, J. C. Gomez-Fernandez, N. V S. Corbalan-Garcia
Date :  27 Nov 13  (Deposition) - 25 Dec 13  (Release) - 25 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  C2 Domain, Calcium Binding, Phospholipid Binding, Rabphilin-3A, C2A, Synaptic Exocytosis Metal-Binding, Protein Transport, C-2 Domain Fold, Exophilin-1 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Guillen, C. Ferrer-Orta, M. Buxaderas, D. Perez-Sanchez, M. Guerrero-Valero, G. Luengo-Gil, J. Pous, P. Guerra, J. C. Gomez-Fernandez, N. Verdaguer, S. Corbalan-Garcia
Structural Insights Into The Ca2+ And Pi(4, 5)P2 Binding Modes Of The C2 Domains Of Rabphilin 3A And Synaptotagmin 1
Proc. Natl. Acad. Sci. Usa 2013
PubMed-ID: 24302762  |  Reference-DOI: 10.1073/PNAS.1316179110

(-) Compounds

Molecule 1 - RABPHILIN-3A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: C2 DOMAIN, UNP RESIDUES 378-510
    Gene: RPH3A
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: EXOPHILIN-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1PIO1Ligand/Ion[(2R)-2-OCTANOYLOXY-3-[OXIDANYL-[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIS(OXIDANYL)-4,5-DIPHOSPHONOOXY-CYCLOHEXYL]OXY-PHOSPHORYL]OXY-PROPYL] OCTANOATE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:410 , PRO A:411 , MET A:412 , ASP A:413 , SER A:414 , TYR A:421 , LYS A:423 , LYS A:435 , LEU A:436 , ARG A:437 , GLU A:475 , GLY A:479 , HIS A:480 , ASN A:481BINDING SITE FOR RESIDUE PIO A 601
2AC2SOFTWARELYS A:423 , ARG A:442 , ARG A:469 , SER A:471BINDING SITE FOR RESIDUE SO4 A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NS0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:427 -Pro A:428

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NS0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NS0)

(-) Exons   (0, 0)

(no "Exon" information available for 4NS0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4ns0a_ A: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeehhh.eeeeeeeeee............eeeeeeee...hhh.eee..........eeeeeeeee..hhhhhhhheeeeeeeee.....eeeeeeeeee.hhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ns0 A 382 TLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 509
                                   391       401       411       421       431       441       451       461       471       481       491       501
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NS0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NS0)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RP3A_RAT | P47709: 1zbd 2chd 2cm5 2cm6 3rpb 4lt7 4np9 5lo8 5lob 5low

(-) Related Entries Specified in the PDB File

4lt7 THE C2A DOMAIN OF RABPHILIN 3A IN COMPLEX WITH ONE CA ION
4np9 THE C2A DOMAIN OF RABPHILIN 3A IN COMPLEX WITH I3P