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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C2A DOMAIN OF RABPHILIN-3A IN COMPLEX WITH A CALCIUM
 
Authors :  N. Verdaguer, C Ferrer-Orta, M. Buxaderas, S. Corbalan-Garcia, D. Pe Sanchez, M. Guerrero-Valero, G. Luengo, J. Pous, P. Guerra, J. C. Gome Fernandez, J. Guillen
Date :  23 Jul 13  (Deposition) - 11 Dec 13  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Calcium Binding, C2 Domain, Signal Transduction, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Guillen, C. Ferrer-Orta, M. Buxaderas, D. Perez-Sanchez, M. Guerrero-Valero, G. Luengo-Gil, J. Pous, P. Guerra, J. C. Gomez-Fernandez, N. Verdaguer, S. Corbalan-Garcia
Structural Insights Into The Ca2+ And Pi(4, 5)P2 Binding Modes Of The C2 Domains Of Rabphilin 3A And Synaptotagmin 1
Proc. Natl. Acad. Sci. Usa V. 110 20503 2013
PubMed-ID: 24302762  |  Reference-DOI: 10.1073/PNAS.1316179110

(-) Compounds

Molecule 1 - RABPHILIN-3A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C2 1 DOMAIN RESIDUES 378-510
    Gene: RPH3A
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: EXOPHILIN-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:413 , ASP A:476 , GLU A:482BINDING SITE FOR RESIDUE CA A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LT7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:427 -Pro A:428

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LT7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LT7)

(-) Exons   (0, 0)

(no "Exon" information available for 4LT7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4lt7a_ A: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeehhhheeeeeeeeee............eeeeeeee...hhh.eee..........eeeeeeee...hhhhhhhheeeeeeeee.....eeeeeeeeee.hhh.....eeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lt7 A 382 TLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 509
                                   391       401       411       421       431       441       451       461       471       481       491       501
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LT7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LT7)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RP3A_RAT | P47709: 1zbd 2chd 2cm5 2cm6 3rpb 4np9 4ns0 5lo8 5lob 5low

(-) Related Entries Specified in the PDB File

2chd CRYSTAL STRUCTURE OF THE C2A DOMAIN OF RABPHILIN-3A
2cm5 CRYSTAL STRUCTURE OF THE C2B DOMAIN OF RABPHILIN
2cm6 CRYSTAL STRUCTURE OF THE C2B DOMAIN OF RABPHILIN3A
2k3h STRUCTURAL DETERMINANTS FOR CA2+ AND PIP2 BINDING BY THE C2A DOMAIN OF RABPHILIN-3A