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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN WITH UNKNOWN FUNCTION FROM DEINOCOCCUS RADIODURANS AT P61 SPACEGROUP
 
Authors :  K. M. Boyko, M. A. Gorbacheva, T. V. Rakitina, D. A. Korgenevsky, I. G. Sh I. A. Shumilin, P. V. Dorovatovsky, A. V. Lipkin, V. O. Popov
Date :  22 Nov 13  (Deposition) - 11 Dec 13  (Release) - 11 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Boyko, M. A. Gorbacheva, T. V. Rakitina, D. A. Korgenevsky, I. G. Shabalin, I. A. Shumilin, P. V. Dorovatovsky, A. V. Lipkin, V. O. Popov
Crystal Structure Of Protein With Unknown Function At P61 Spacegroup
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DR_2100
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 243230
    Strain: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2ACT3Ligand/IonACETATE ION
3GOL1Ligand/IonGLYCEROL
4SO41Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:55 , GLU A:71 , HIS A:82 , ILE A:105 , HOH A:334BINDING SITE FOR RESIDUE ACT A 201
2AC2SOFTWAREVAL A:100 , THR A:101 , ASP A:102 , LEU A:103 , HOH A:343 , HOH A:409BINDING SITE FOR RESIDUE ACT A 202
3AC3SOFTWARESER A:28 , GLU A:30 , HIS A:31 , ASN A:99 , HOH A:339 , HOH A:403BINDING SITE FOR RESIDUE GOL A 203
4AC4SOFTWARELYS B:96 , VAL B:100 , THR B:101 , ASP B:102 , LEU B:103BINDING SITE FOR RESIDUE ACT B 201
5AC5SOFTWARELYS A:96 , PRO B:86 , GLY B:87 , VAL B:88 , THR B:89 , GLN B:90 , HOH B:325 , HOH B:340 , HOH B:381BINDING SITE FOR RESIDUE SO4 B 202
6AC6SOFTWAREHIS A:80 , HOH A:408 , HOH A:418 , GLY B:77 , HIS B:80 , THR B:81 , HOH B:403BINDING SITE FOR RESIDUE ACE B 203
7AC7SOFTWARETYR B:55 , GLU B:71 , HIS B:82BINDING SITE FOR RESIDUE ACE B 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NPO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NPO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NPO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NPO)

(-) Exons   (0, 0)

(no "Exon" information available for 4NPO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4npo A  17 TMVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAINIMG 118
                                    26        36        46        56        66        76        86        96       106       116  


Chain B from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....hhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhhhh.hhhhhhhhhhhh.....eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4npo B  14 RRTTMVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAINIMG 118
                                    23        33        43        53        63        73        83        93       103       113
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NPO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NPO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NPO)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4NPO)

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  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4npo)
 

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(-) Related Entries Specified in the PDB File

3e8o 4npa