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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE (DR_2100) FROM DEINOCOCCUS RADIODURANS AT 1.40 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  20 Aug 08  (Deposition) - 09 Sep 08  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Putative Antibiotic Biosynthesis Monooxygenase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Protein Of Unknown Function With Ferredoxin-Like Fold (Np_295823. 1) From Deinococcus Radiodurans At 1. 40 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN WITH ERREDOXIN-LIKE FOLD
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_295823.1, DR_2100
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3UNL2Ligand/IonUNKNOWN LIGAND

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:55 , GLU A:71 , HIS A:82 , ILE A:105 , HOH A:231BINDING SITE FOR RESIDUE UNL A 200
2AC2SOFTWAREILE B:42 , TYR B:55 , GLU B:71 , HIS B:82 , ILE B:105 , HOH B:225BINDING SITE FOR RESIDUE UNL B 200
3AC3SOFTWARETHR B:24 , ASP B:60 , HIS B:66 , PHE B:67 , LEU B:68 , HOH B:324 , HOH B:330BINDING SITE FOR RESIDUE EDO B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E8O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3E8O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E8O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E8O)

(-) Exons   (0, 0)

(no "Exon" information available for 3E8O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
 aligned with Q9RSM4_DEIRA | Q9RSM4 from UniProtKB/TrEMBL  Length:118

    Alignment length:102
                                    26        36        46        56        66        76        86        96       106       116  
         Q9RSM4_DEIRA    17 TMVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAINIMG 118
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 3e8o A  17 TmVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAmHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAINImG 118
                             |      26        36        46        56        66        76  |     86        96       106       116| 
                             |                                                           79-MSE                               117-MSE
                            18-MSE                                                                                                


Chain B from PDB  Type:PROTEIN  Length:101
 aligned with Q9RSM4_DEIRA | Q9RSM4 from UniProtKB/TrEMBL  Length:118

    Alignment length:101
                                    27        37        47        57        67        77        87        97       107       117 
         Q9RSM4_DEIRA    18 MVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAMHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAINIMG 118
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh......eeeeee....eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 3e8o B  18 mVISHGTLSASAEHAAHLRQLLVHIAQATRQEDGCLLYLVSEDLSQPGHFLITEHWDNLGAmHTHLALPGVTQAIDALKHLNVTDLKITAYEAGEAINImG 118
                            |       27        37        47        57        67        77 |      87        97       107       117 
                            |                                                           79-MSE                               117-MSE
                           18-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3E8O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3E8O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E8O)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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