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(-) Description

Title :  KUENENIA STUTTGARTIENSIS HYDROXYLAMINE OXIDOREDUCTASE SOAKED IN HYDRAZINE
 
Authors :  W. J. Maalcke, A. Dietl, S. J. Marritt, J. N. Butt, M. S. M. Jetten, J. T. Ke T. R. M. B. Barends, B. Kartal
Date :  08 Oct 13  (Deposition) - 11 Dec 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  C-Type Cytochrome, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. J. Maalcke, A. Dietl, S. J. Marritt, J. N. Butt, M. S. Jetten, J. T. Keltjens, T. R. Barends, B. Kartal
Structural Basis Of Biological No Generation By Octaheme Oxidoreductases.
J. Biol. Chem. V. 289 1228 2014
PubMed-ID: 24302732  |  Reference-DOI: 10.1074/JBC.M113.525147

(-) Compounds

Molecule 1 - HYDROXYLAMINE OXIDOREDUCTASE
    Chains: A
    EC Number: 1.7.3.4
    Organism Scientific: CANDIDATUS KUENENIA STUTTGARTIENSIS
    Organism Taxid: 174633
    Synonym: SIMILAR TO HYDROXYLAMINE OXIDOREDUCTASE HAO

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 21)

Asymmetric Unit (6, 21)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2HEC1Ligand/IonHEME C
3HEM7Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4HG11Ligand/Ion1-[(4-CYCLOHEXYLBUTANOYL)(2-HYDROXYETHYL)AMINO]-1-DEOXY-D-GLUCITOL
5HZN1Ligand/IonHYDRAZINE
6PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (6, 63)
No.NameCountTypeFull Name
1EDO21Ligand/Ion1,2-ETHANEDIOL
2HEC3Ligand/IonHEME C
3HEM21Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
4HG13Ligand/Ion1-[(4-CYCLOHEXYLBUTANOYL)(2-HYDROXYETHYL)AMINO]-1-DEOXY-D-GLUCITOL
5HZN3Ligand/IonHYDRAZINE
6PO412Ligand/IonPHOSPHATE ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:79 , TRP A:516 , ARG A:519 , HOH A:819 , HOH A:820 , HOH A:821 , HOH A:839 , HOH A:840BINDING SITE FOR RESIDUE PO4 A 601
02AC2SOFTWAREARG A:79 , GLY A:80 , LYS A:83 , LYS A:148 , TRP A:516 , HOH A:817 , HOH A:818 , HOH A:986BINDING SITE FOR RESIDUE PO4 A 602
03AC3SOFTWARELYS A:472 , HOH A:1114BINDING SITE FOR RESIDUE PO4 A 603
04AC4SOFTWAREASN A:270 , HOH A:732 , HOH A:733 , HOH A:734 , HOH A:740 , HOH A:741BINDING SITE FOR RESIDUE PO4 A 604
05AC5SOFTWAREILE A:127 , ASP A:130 , ARG A:240 , HIS A:241 , CYS A:349 , HEM A:614BINDING SITE FOR RESIDUE EDO A 605
06AC6SOFTWAREGLY A:165 , ASN A:166 , ASN A:167 , LYS A:170BINDING SITE FOR RESIDUE EDO A 606
07AC7SOFTWARELYS A:289 , LYS A:290 , LYS A:292 , ASN A:295BINDING SITE FOR RESIDUE EDO A 607
08AC8SOFTWARELEU A:291 , TYR A:303 , GLN A:307 , ASN A:308 , ASP A:348BINDING SITE FOR RESIDUE EDO A 608
09AC9SOFTWAREGLN A:314 , GLY A:317 , TYR A:320 , HOH A:949 , HOH A:951 , HOH A:965 , HOH A:1032BINDING SITE FOR RESIDUE EDO A 609
10BC1SOFTWAREARG A:93 , ARG A:353 , HOH A:916BINDING SITE FOR RESIDUE EDO A 610
11BC2SOFTWAREASP A:77 , HIS A:99 , HOH A:816BINDING SITE FOR RESIDUE EDO A 611
12BC3SOFTWAREASP A:262 , HIS A:263 , TYR A:451 , HEC A:616BINDING SITE FOR RESIDUE HZN A 612
13BC4SOFTWAREGLN A:47 , TRP A:94 , TRP A:101 , SER A:105 , GLN A:106 , THR A:107 , GLU A:115 , CYS A:116 , CYS A:119 , HIS A:120 , GLN A:123 , CYS A:160 , GLY A:165 , ASN A:166 , HIS A:168 , LEU A:171 , SER A:351 , PRO A:352 , ARG A:353 , HEM A:614 , HOH A:920 , HOH A:1010BINDING SITE FOR RESIDUE HEM A 613
14BC5SOFTWAREHIS A:120 , ILE A:127 , HIS A:136 , VAL A:158 , GLY A:159 , CYS A:160 , CYS A:163 , HIS A:164 , PRO A:174 , ARG A:233 , SER A:235 , ARG A:240 , HIS A:241 , HIS A:350 , SER A:351 , EDO A:605 , HEM A:613 , HEM A:615 , HOH A:834 , HOH A:835BINDING SITE FOR RESIDUE HEM A 614
15BC6SOFTWARESER A:135 , HIS A:136 , ARG A:142 , ARG A:143 , GLY A:144 , ILE A:145 , ILE A:147 , VAL A:158 , LEU A:178 , CYS A:179 , CYS A:182 , HIS A:183 , CYS A:234 , PHE A:243 , PRO A:245 , HEM A:614 , HEM A:617 , HOH A:928 , HOH A:930 , HOH A:934 , HOH A:979 , HOH A:980 , HOH A:984BINDING SITE FOR RESIDUE HEM A 615
16BC7SOFTWAREASN A:205 , PHE A:209 , HIS A:212 , GLY A:222 , CYS A:223 , CYS A:226 , HIS A:227 , VAL A:256 , CYS A:257 , HIS A:258 , HIS A:263 , TYR A:320 , ASP A:322 , MET A:323 , MET A:325 , LYS A:439 , THR A:450 , TYR A:451 , ARG A:525 , HZN A:612 , HEM A:618 , HOH A:729 , HOH A:960 , HOH A:962BINDING SITE FOR RESIDUE HEC A 616
17BC8SOFTWAREARG A:143 , CYS A:179 , HIS A:183 , GLU A:186 , THR A:187 , HIS A:190 , HIS A:198 , CYS A:234 , CYS A:237 , HIS A:238 , ALA A:248 , ARG A:249 , LYS A:290 , LEU A:291 , MET A:306 , GLY A:309 , HIS A:311 , LYS A:518 , HEM A:615 , HOH A:939 , HOH A:941 , HOH A:977 , HOH A:978BINDING SITE FOR RESIDUE HEM A 617
18BC9SOFTWAREGLY A:196 , SER A:197 , HIS A:198 , ALA A:201 , ASN A:205 , CYS A:226 , HIS A:227 , ILE A:229 , GLY A:236 , ALA A:253 , CYS A:254 , CYS A:257 , HIS A:258 , CYS A:301 , GLN A:314 , TYR A:320 , HEC A:616 , HOH A:960 , HOH A:961 , HOH A:965 , HOH A:1030BINDING SITE FOR RESIDUE HEM A 618
19CC1SOFTWAREHIS A:258 , GLU A:265 , TYR A:269 , PRO A:299 , THR A:300 , CYS A:301 , CYS A:304 , HIS A:305 , GLY A:317 , THR A:318 , ARG A:330 , TRP A:342 , MET A:362 , TYR A:438 , ALA A:442 , HIS A:443 , HEM A:620 , HOH A:962 , HOH A:963 , HOH A:964 , HOH A:965 , HOH A:966 , HOH A:1056BINDING SITE FOR RESIDUE HEM A 619
20CC2SOFTWARETYR A:95 , ARG A:233 , THR A:239 , ARG A:240 , ILE A:273 , HIS A:274 , LEU A:277 , TYR A:296 , ARG A:297 , TYR A:303 , CYS A:346 , CYS A:349 , HIS A:350 , PHE A:354 , LYS A:358 , MET A:444 , HEM A:619 , HOH A:756 , HOH A:757 , HOH A:1085BINDING SITE FOR RESIDUE HEM A 620
21CC3SOFTWAREPHE A:64 , LEU A:408 , LEU A:409 , PRO A:410 , GLY A:411 , PRO A:414BINDING SITE FOR RESIDUE HG1 A 621

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N4L)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:240 -His A:241
2Asp A:390 -Pro A:391

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N4L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N4L)

(-) Exons   (0, 0)

(no "Exon" information available for 4N4L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:497
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...ee.hhh..hhhhh.ee......ee.........eehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh....hhhhh.....ee..ee.....hhhhhhh.........hhhhhhh.hhhhhhhhh.....hhhhh.......hhhhhh.hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhh.hhhhhh..............hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.......................hhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh...hhhhhhhhhh.....hhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n4l A  38 GPTFQDVASQVFGQPVGPDNDGTLYIFGLTAKYTEPEYVDGRGPYKSFLKMLPSIRWYDPEHYWTNGSQTEGVFKNEECVLCHTVQTPTIVNDWKQSSHGSKDIRRGIGIKKDGKPVEDLVGCADCHGNNHQKLEMPTYKLCNDCHPKETAEHRAGGLGSHTHAYTVNVLEFSWHVGKPAEEVTGCAHCHAIAENRCSGCHTRHKFDPAEARKPTACRVCHMGIDHDEWAMYNTSIHGALYEAESARMDWGKKLKKGNYRVPTCAYCHMQNGDHNPQRFGTIYSDMGMFQVDRGAPKHKAKRDSWIKLCQDCHSPRFAADKLKEMDAGVNLSFTKWREAAAVIVGCYLDGVVDPMPEGSAPDWYGHYTFSLLPGGDPRFYATSNLERLGLEMICYLTGNVYKAYAHMSMYNQTYGNGSAFEQDRKLVEIKTEAAKLRRFAAIEKKIGLEHKSADFWKHGEYLDLLPGWKRKPGDVDVEWFKRTDIPHRANADAGVEI 534
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N4L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N4L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N4L)

(-) Gene Ontology  (5, 5)

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        Q1PX48_9BACT | Q1PX48: 4n4j 4n4k 4n4m 4rwm

(-) Related Entries Specified in the PDB File

4n4j 4n4k 4n4m 4n4n 4n4o