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(-) Description

Title :  KUENENIA STUTTGARTIENSIS HYDROXYLAMINE OXIDOREDUCTASE
 
Authors :  W. J. Maalcke, A. Dietl, S. J. Marritt, J. N. Butt, M. S. M. Jetten, J. T. Ke T. R. M. B. Barends, B. Kartal
Date :  08 Oct 13  (Deposition) - 11 Dec 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  C-Type Cytochrome, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. J. Maalcke, A. Dietl, S. J. Marritt, J. N. Butt, M. S. Jetten, J. T. Keltjens, T. R. Barends, B. Kartal
Structural Basis Of Biological No Generation By Octaheme Oxidoreductases.
J. Biol. Chem. V. 289 1228 2014
PubMed-ID: 24302732  |  Reference-DOI: 10.1074/JBC.M113.525147

(-) Compounds

Molecule 1 - HYDROXYLAMINE OXIDOREDUCTASE
    Chains: A
    EC Number: 1.7.3.4
    Organism Scientific: CANDIDATUS KUENENIA STUTTGARTIENSIS
    Organism Taxid: 174633
    Synonym: SIMILAR TO HYDROXYLAMINE OXIDOREDUCTASE HAO

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric Unit (4, 16)
No.NameCountTypeFull Name
1HEC1Ligand/IonHEME C
2HEM7Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3HG14Ligand/Ion1-[(4-CYCLOHEXYLBUTANOYL)(2-HYDROXYETHYL)AMINO]-1-DEOXY-D-GLUCITOL
4PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 48)
No.NameCountTypeFull Name
1HEC3Ligand/IonHEME C
2HEM21Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3HG112Ligand/Ion1-[(4-CYCLOHEXYLBUTANOYL)(2-HYDROXYETHYL)AMINO]-1-DEOXY-D-GLUCITOL
4PO412Ligand/IonPHOSPHATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:79 , TRP A:516 , ARG A:519 , HOH A:730 , HOH A:731 , HOH A:757 , HOH A:1118 , HOH A:1119BINDING SITE FOR RESIDUE PO4 A 601
02AC2SOFTWAREARG A:79 , GLY A:80 , LYS A:83 , LYS A:148 , TRP A:516 , HOH A:834 , HOH A:1113 , HOH A:1117BINDING SITE FOR RESIDUE PO4 A 602
03AC3SOFTWARELYS A:472 , HOH A:1058BINDING SITE FOR RESIDUE PO4 A 603
04AC4SOFTWAREALA A:246 , LYS A:250 , ARG A:284 , TRP A:287 , HOH A:858 , HOH A:859 , HOH A:860 , HOH A:935BINDING SITE FOR RESIDUE PO4 A 604
05AC5SOFTWARETRP A:373 , LEU A:408 , LEU A:409 , PRO A:410 , GLY A:411 , PRO A:414 , HG1 A:606BINDING SITE FOR RESIDUE HG1 A 605
06AC6SOFTWAREASP A:322 , PRO A:414 , ARG A:525 , HG1 A:605 , HEC A:612 , HOH A:1127BINDING SITE FOR RESIDUE HG1 A 606
07AC7SOFTWAREPHE A:41 , VAL A:44 , PHE A:49 , LEU A:409 , HOH A:1021BINDING SITE FOR RESIDUE HG1 A 607
08AC8SOFTWAREPRO A:39 , ALA A:378BINDING SITE FOR RESIDUE HG1 A 608
09AC9SOFTWAREGLN A:47 , TRP A:94 , TRP A:101 , SER A:105 , GLN A:106 , THR A:107 , PHE A:111 , GLU A:115 , CYS A:116 , CYS A:119 , HIS A:120 , GLN A:123 , CYS A:160 , ALA A:161 , GLY A:165 , ASN A:166 , HIS A:168 , LEU A:171 , SER A:351 , PRO A:352 , ARG A:353 , HEM A:610 , HOH A:956 , HOH A:957BINDING SITE FOR RESIDUE HEM A 609
10BC1SOFTWARETRP A:94 , HIS A:120 , ILE A:127 , HIS A:136 , VAL A:158 , GLY A:159 , CYS A:160 , CYS A:163 , HIS A:164 , PRO A:174 , ARG A:233 , SER A:235 , ARG A:240 , HIS A:241 , HIS A:350 , SER A:351 , PHE A:354 , HEM A:609 , HEM A:611 , HOH A:718 , HOH A:722 , HOH A:724BINDING SITE FOR RESIDUE HEM A 610
11BC2SOFTWARESER A:135 , HIS A:136 , ARG A:142 , ARG A:143 , GLY A:144 , ILE A:145 , ILE A:147 , VAL A:158 , LEU A:178 , CYS A:179 , CYS A:182 , HIS A:183 , CYS A:234 , PHE A:243 , PRO A:245 , HEM A:610 , HEM A:613 , HOH A:713 , HOH A:714 , HOH A:831 , HOH A:850 , HOH A:853 , HOH A:854BINDING SITE FOR RESIDUE HEM A 611
12BC3SOFTWAREASN A:205 , PHE A:209 , HIS A:212 , GLY A:222 , CYS A:223 , CYS A:226 , HIS A:227 , VAL A:256 , CYS A:257 , HIS A:258 , HIS A:263 , TYR A:320 , ASP A:322 , MET A:323 , MET A:325 , LYS A:439 , THR A:450 , TYR A:451 , ARG A:525 , HG1 A:606 , HEM A:614 , HOH A:906 , HOH A:1002 , HOH A:1156 , HOH A:1157BINDING SITE FOR RESIDUE HEC A 612
13BC4SOFTWAREARG A:143 , CYS A:179 , HIS A:183 , GLU A:186 , THR A:187 , HIS A:190 , CYS A:234 , CYS A:237 , HIS A:238 , ALA A:248 , ARG A:249 , LYS A:290 , LEU A:291 , MET A:306 , GLY A:309 , HIS A:311 , LYS A:518 , HEM A:611 , HOH A:825 , HOH A:827 , HOH A:843 , HOH A:848BINDING SITE FOR RESIDUE HEM A 613
14BC5SOFTWAREGLY A:196 , SER A:197 , HIS A:198 , ALA A:201 , ASN A:205 , CYS A:226 , HIS A:227 , ILE A:229 , GLY A:236 , CYS A:237 , ALA A:253 , CYS A:254 , CYS A:257 , HIS A:258 , CYS A:301 , PRO A:313 , GLN A:314 , TYR A:320 , HEC A:612 , HOH A:768 , HOH A:907 , HOH A:1157 , HOH A:1158BINDING SITE FOR RESIDUE HEM A 614
15BC6SOFTWAREHIS A:258 , GLU A:265 , TYR A:269 , PRO A:299 , THR A:300 , CYS A:301 , CYS A:304 , HIS A:305 , GLY A:317 , THR A:318 , ARG A:330 , TRP A:342 , MET A:362 , TYR A:438 , ALA A:442 , HIS A:443 , HEM A:616 , HOH A:768 , HOH A:769 , HOH A:906 , HOH A:908 , HOH A:909 , HOH A:910BINDING SITE FOR RESIDUE HEM A 615
16BC7SOFTWARETYR A:95 , ARG A:233 , THR A:239 , ARG A:240 , ILE A:273 , HIS A:274 , LEU A:277 , TYR A:296 , ARG A:297 , PRO A:299 , TYR A:303 , CYS A:346 , CYS A:349 , HIS A:350 , PHE A:354 , LYS A:358 , MET A:444 , HEM A:615 , HOH A:924 , HOH A:931 , HOH A:932BINDING SITE FOR RESIDUE HEM A 616

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N4J)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:240 -His A:241
2Asp A:390 -Pro A:391

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N4J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N4J)

(-) Exons   (0, 0)

(no "Exon" information available for 4N4J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:497
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...ee.hhh..hhhhh.ee......ee.........eehhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh....hhhhh.....ee..ee.....hhhhhhh.........hhhhhhh.hhhhhhhhh.....hhhhh.......hhhhhh.hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhh.hhhhhh..............hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh...hhhhhhhhhh.....hhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n4j A  38 GPTFQDVASQVFGQPVGPDNDGTLYIFGLTAKYTEPEYVDGRGPYKSFLKMLPSIRWYDPEHYWTNGSQTEGVFKNEECVLCHTVQTPTIVNDWKQSSHGSKDIRRGIGIKKDGKPVEDLVGCADCHGNNHQKLEMPTYKLCNDCHPKETAEHRAGGLGSHTHAYTVNVLEFSWHVGKPAEEVTGCAHCHAIAENRCSGCHTRHKFDPAEARKPTACRVCHMGIDHDEWAMYNTSIHGALYEAESARMDWGKKLKKGNYRVPTCAYCHMQNGDHNPQRFGTIYSDMGMFQVDRGAPKHKAKRDSWIKLCQDCHSPRFAADKLKEMDAGVNLSFTKWREAAAVIVGCYLDGVVDPMPEGSAPDWYGHYTFSLLPGGDPRFYATSNLERLGLEMICYLTGNVYKAYAHMSMYNQTYGNGSAFEQDRKLVEIKTEAAKLRRFAAIEKKIGLEHKSADFWKHGEYLDLLPGWKRKPGDVDVEWFKRTDIPHRANADAGVEI 534
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N4J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N4J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N4J)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:240 - His A:241   [ RasMol ]  
    Asp A:390 - Pro A:391   [ RasMol ]  
 
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        Q1PX48_9BACT | Q1PX48: 4n4k 4n4l 4n4m 4rwm

(-) Related Entries Specified in the PDB File

4n4k 4n4l 4n4m 4n4n 4n4o