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(-) Description

Title :  CORE STRUCTURE OF THE U6 SMALL NUCLEAR RIBONUCLEOPROTEIN AT 1.7 ANGSTROM RESOLUTION
 
Authors :  E. J. Montemayor, E. C. Curran, H. Liao, K. L. Andrews, C. N. Treba, S. E. B D. A. Brow
Date :  02 Oct 13  (Deposition) - 14 May 14  (Release) - 02 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Spliceosomal Ribonucleoprotein Complex, Annealing U6 And U4 Snrna, Nucleus, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. J. Montemayor, E. C. Curran, H. H. Liao, K. L. Andrews, C. N. Treba, S. E. Butcher, D. A. Brow
Core Structure Of The U6 Small Nuclear Ribonucleoprotein At 1. 7- Angstrom Resolution.
Nat. Struct. Mol. Biol. V. 21 544 2014
PubMed-ID: 24837192  |  Reference-DOI: 10.1038/NSMB.2832

(-) Compounds

Molecule 1 - U4/U6 SNRNA-ASSOCIATED-SPLICING FACTOR PRP24
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21(DE3) STAR PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PRP24, YM8156.10C, YMR268C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: U4/U6 SNRNP PROTEIN
 
Molecule 2 - U6 SNRNA
    Chains: B
    Engineered: YES
    Mutation: YES
    Other Details: IN VITRO TRANSCRIPTION USING A CLONED PLASMID TEMPLATE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:386 , ASN A:388 , ARG A:392 , HOH A:872BINDING SITE FOR RESIDUE SO4 A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N0T)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:317 -Pro A:318

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N0T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N0T)

(-) Exons   (0, 0)

(no "Exon" information available for 4N0T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeeee....hhhhhhhhhhhhh.eeeeeeee......eeeeeee.hhhhhhhhhh....ee..ee.eeee....eeeee......hhhhhhhhhhhh...eeeee...........eeeeee.hhhhhhhhhhhhh..ee..ee.eeee.hhhhh....hhhhhh..eeeeeeehhhhhhhhhhhhhhhhhh.eeeee............eeeeeee.hhhhhhhhhhhh..ee..ee.eeee..hhhhhhhhhhhhhhh..hhhhhh.eeeee......hhhhhhhhhhhh...hhh.eeeeeeehhhheeeeee.hhhhhhhhhhhhh..ee..ee.eeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n0t A  36 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKPFLERNEVKRLLASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTINDMKRYYNNQQ 398
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395   


Chain B from PDB  Type:RNA  Length:65
                                                                                                 
                 4n0t B  30 GGUCAAUUUGAAACAAUACAGAGAUGAUCAGCGGUUCCCCUGGAUGAACCGUUUUACAAAGAGAC 100
                                    39        49        59        69||      85        95     
                                                                   70|                       
                                                                    77
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N0T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N0T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N0T)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  4n0t
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  PRP24_YEAST | P49960
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRP24_YEAST | P49960: 2ghp 2go9 2kh9 2l9w 5tf6

(-) Related Entries Specified in the PDB File

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