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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL 3 RNA BINDING DOMAINS OF THE YEAST SPLICING FACTOR PRP24
 
Authors :  E. Bae, G. E. Wesenberg, G. N. Phillips Jr. , E. Bitto, C. A. Bingman, Cen Eukaryotic Structural Genomics (Cesg)
Date :  27 Mar 06  (Deposition) - 25 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Rna Chaperone, Rna Binding Domain, Rna Recognition Motif, Splicing Factor, Snrnp, Spliceosome, Structural Genomics, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Cesg, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Bae, N. J. Reiter, C. A. Bingman, S. S. Kwan, D. Lee, G. N. Phillips Jr. , S. E. Butcher, D. A. Brow
Structure And Interactions Of The First Three Rna Recognition Motifs Of Splicing Factor Prp24.
J. Mol. Biol. V. 367 1447 2007
PubMed-ID: 17320109  |  Reference-DOI: 10.1016/J.JMB.2007.01.078

(-) Compounds

Molecule 1 - U4/U6 SNRNA-ASSOCIATED SPLICING FACTOR PRP24
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVP 16
    Expression System Strain: B834 P(RARE2)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PRP24
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: U4/U6 SNRNP PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 32)

Asymmetric Unit (1, 32)
No.NameCountTypeFull Name
1MSE32Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2GHP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GHP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GHP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GHP)

(-) PROSITE Motifs  (1, 24)

Asymmetric Unit (1, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.PRP24_YEAST41-116
 
 
 
 
 
 
 
117-195
 
 
 
 
 
 
 
210-289
 
 
 
 
 
 
 		  24A:41-116
B:41-116
C:41-116
D:41-116
E:41-116
F:41-116
G:41-116
H:41-116
A:117-195
B:117-195
C:117-195
D:117-195
E:117-195
F:117-195
G:117-195
H:117-195
A:210-289
B:210-289
C:210-289
D:210-289
E:210-289
F:210-289
G:210-289
H:210-289
Biological Unit 1 (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.PRP24_YEAST41-116
 
 
 
 
 
 
 
117-195
 
 
 
 
 
 
 
210-289
 
 
 
 
 
 
 		  12A:41-116
B:41-116
C:41-116
D:41-116
-
-
-
-
A:117-195
B:117-195
C:117-195
D:117-195
-
-
-
-
A:210-289
B:210-289
C:210-289
D:210-289
-
-
-
-
Biological Unit 2 (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.PRP24_YEAST41-116
 
 
 
 
 
 
 
117-195
 
 
 
 
 
 
 
210-289
 
 
 
 
 
 
 		  12-
-
-
-
E:41-116
F:41-116
G:41-116
H:41-116
-
-
-
-
E:117-195
F:117-195
G:117-195
H:117-195
-
-
-
-
E:210-289
F:210-289
G:210-289
H:210-289

(-) Exons   (1, 8)

Asymmetric Unit (1, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YMR268C1YMR268C.1XIII:804221-8028871335PRP24_YEAST1-4444448A:41-291 (gaps)
B:41-291 (gaps)
C:41-291 (gaps)
D:41-291 (gaps)
E:41-291 (gaps)
F:41-291 (gaps)
G:41-291 (gaps)
H:41-291 (gaps)		251
251
251
251
251
251
251
251

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
 aligned with PRP24_YEAST | P49960 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:251
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
          PRP24_YEAST    41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 291
               SCOP domains d2ghpa2 A:41-115 U4/U6 snRNA-associated-splicing factor PRP24              d2ghpa1 A:116-196 U4/U6 snRNA-assoc       iated-splicing factor PRP24                     d2ghpa3 A:206-291 U4/U6 snRNA-associated-s   plicing factor PRP24                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhh.eeeeeeee......eeeeeee.hhhhhhhhhh....ee..ee.eeee....eeeee......hhhhhhhhhhhh.....eee..-------..eeeee..hhhhhhhhhhhhh..ee..ee.eeee....---------.....eeeeeee.....hhhhhhhhhhhhh.eeeee......---...eeeeeee.hhhhhhhhhhhh.eee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: A:41-116 UniProt: 41-116                                          RRM  PDB: A:117-195 UniProt: 117-195                                           --------------RRM  PDB: A:210-289 UniProt: 210-289                                            -- PROSITE
               Transcript 1 Exon 1.1  PDB: A:41-291 (gaps) UniProt: 1-444 [INCOMPLETE]                                                                                                                                                                                                  Transcript 1
                 2ghp A  41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWmTNFPPSYTQRNIRDLLQDINVVALSIRLP-------RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL---------TLEGREImIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK---FNNCCAFmVFENKDSAERALQmNRSLLGNREISVSLADKKP 291
                                    50        60        70        80        90       100       110       120|      130       140       150       160       170       180       190     |   -     | 210  |    220       230       240      |  -|      260       270 |     280       290 
                                                                                                          121-MSE                      150     158                                   196       206      |                               247 251      |           272-MSE               
                                                                                                                                                                                                      213-MSE                                      258-MSE                             


Chain B from PDB  Type:PROTEIN  Length:239
 aligned with PRP24_YEAST | P49960 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:251
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
          PRP24_YEAST    41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 291
               SCOP domains d2ghpb2 B:41-115 U4/U6 snRNA-associated-splicing factor PRP24              d2ghpb1 B:116-196 U4/U6 snRNA-associated-splicing factor PRP24                            d2ghpb3 B:206-291 U4/U6 snRNA-associated-s   plicing factor PRP24                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhh.eeeeeeee......eeeeeee.hhhhhhhhhh....ee..ee.eeee....eeeee......hhhhhhhhhhhh...eeeee..hhhhh....eeeeee.hhhhhhhhhhhhh..ee..ee.eeee....---------.....eeeeeee.....hhhhhhhhhhhhh.eeeee......---...eeeeeee.hhhhhhhhhhhh.eee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: B:41-116 UniProt: 41-116                                          RRM  PDB: B:117-195 UniProt: 117-195                                           --------------RRM  PDB: B:210-289 UniProt: 210-289                                            -- PROSITE
               Transcript 1 Exon 1.1  PDB: B:41-291 (gaps) UniProt: 1-444 [INCOMPLETE]                                                                                                                                                                                                  Transcript 1
                 2ghp B  41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWmTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL---------TLEGREImIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK---FNNCCAFmVFENKDSAERALQmNRSLLGNREISVSLADKKP 291
                                    50        60        70        80        90       100       110       120|      130       140       150       160       170       180       190     |   -     | 210  |    220       230       240      |  -|      260       270 |     280       290 
                                                                                                          121-MSE                                                                    196       206      |                               247 251      |           272-MSE               
                                                                                                                                                                                                      213-MSE                                      258-MSE                             


Chain C from PDB  Type:PROTEIN  Length:232
 aligned with PRP24_YEAST | P49960 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:251
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
          PRP24_YEAST    41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 291
               SCOP domains d2ghpc2 C:41-115 U4/U6 snRNA-associated-splicing factor PRP24              d2ghpc1 C:116-196 U4/U6 snRNA-assoc       iated-splicing factor PRP24                     d2ghpc3 C:206-291 U4/U6 snRNA-associated-s   plicing factor PRP24                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhh.eeeeeeee......eeeeeee.hhhhhhhhhh....ee..ee.eeee....eeeee......hhhhhhhhhhhh...eeeee..-------..eeeeee.hhhhhhhhhhhhh..ee..ee.eeee....---------.....eeeeeee.....hhhhhhhhhhhhh.eeeee......---...eeeeeee.hhhhhhhhhhhh.eee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: C:41-116 UniProt: 41-116                                          RRM  PDB: C:117-195 UniProt: 117-195                                           --------------RRM  PDB: C:210-289 UniProt: 210-289                                            -- PROSITE
               Transcript 1 Exon 1.1  PDB: C:41-291 (gaps) UniProt: 1-444 [INCOMPLETE]                                                                                                                                                                                                  Transcript 1
                 2ghp C  41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWmTNFPPSYTQRNIRDLLQDINVVALSIRLP-------RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL---------TLEGREImIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK---FNNCCAFmVFENKDSAERALQmNRSLLGNREISVSLADKKP 291
                                    50        60        70        80        90       100       110       120|      130       140       150       160       170       180       190     |   -     | 210  |    220       230       240      |  -|      260       270 |     280       290 
                                                                                                          121-MSE                      150     158                                   196       206      |                               247 251      |           272-MSE               
                                                                                                                                                                                                      213-MSE                                      258-MSE                             


Chain D from PDB  Type:PROTEIN  Length:232
 aligned with PRP24_YEAST | P49960 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:251
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
          PRP24_YEAST    41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 291
               SCOP domains d2ghpd2 D:41-115 U4/U6 snRNA-associated-splicing factor PRP24              d2ghpd1 D:116-196 U4/U6 snRNA-assoc       iated-splicing factor PRP24                     d2ghpd3 D:206-291 U4/U6 snRNA-associated-s   plicing factor PRP24                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhhhhhh.eeeeeeee.....eeeeeeee.hhhhhhhhhh....ee..ee.eeee....eeeee......hhhhhhhhhhhh...eeeee..-------..eeeeee.hhhhhhhhhhhhh..ee..ee.eeee....---------.....eeeeeee.....hhhhhhhhhhhhh.eeeee......---...eeeeeee.hhhhhhhhhhhh.eee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: D:41-116 UniProt: 41-116                                          RRM  PDB: D:117-195 UniProt: 117-195                                           --------------RRM  PDB: D:210-289 UniProt: 210-289                                            -- PROSITE
               Transcript 1 Exon 1.1  PDB: D:41-291 (gaps) UniProt: 1-444 [INCOMPLETE]                                                                                                                                                                                                  Transcript 1
                 2ghp D  41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWmTNFPPSYTQRNIRDLLQDINVVALSIRLP-------RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL---------TLEGREImIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK---FNNCCAFmVFENKDSAERALQmNRSLLGNREISVSLADKKP 291
                                    50        60        70        80        90       100       110       120|      130       140       150       160       170       180       190     |   -     | 210  |    220       230       240      |  -|      260       270 |     280       290 
                                                                                                          121-MSE                      150     158                                   196       206      |                               247 251      |           272-MSE               
                                                                                                                                                                                                      213-MSE                                      258-MSE                             


Chain E from PDB  Type:PROTEIN  Length:232
 aligned with PRP24_YEAST | P49960 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:251
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
          PRP24_YEAST    41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 291
               SCOP domains d2ghpe2 E:41-115 U4/U6 snRNA-associated-splicing factor PRP24              d2ghpe1 E:116-196 U4/U6 snRNA-assoc       iated-splicing factor PRP24                     d2ghpe3 E:206-291 U4/U6 snRNA-associated-s   plicing factor PRP24                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhh.eeeeeeee......eeeeeee.hhhhhhhhhh....ee..ee.eeee....eeeee......hhhhhhhhhhhh.....eee..-------..eeeee..hhhhhhhhhhhhh..ee..ee.eeee....---------.....eeeeeee.....hhhhhhhhhhhhh.eeeee......---...eeeeeee.hhhhhhhhhhhh.eee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: E:41-116 UniProt: 41-116                                          RRM  PDB: E:117-195 UniProt: 117-195                                           --------------RRM  PDB: E:210-289 UniProt: 210-289                                            -- PROSITE
               Transcript 1 Exon 1.1  PDB: E:41-291 (gaps) UniProt: 1-444 [INCOMPLETE]                                                                                                                                                                                                  Transcript 1
                 2ghp E  41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWmTNFPPSYTQRNIRDLLQDINVVALSIRLP-------RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL---------TLEGREImIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK---FNNCCAFmVFENKDSAERALQmNRSLLGNREISVSLADKKP 291
                                    50        60        70        80        90       100       110       120|      130       140       150       160       170       180       190     |   -     | 210  |    220       230       240      |  -|      260       270 |     280       290 
                                                                                                          121-MSE                      150     158                                   196       206      |                               247 251      |           272-MSE               
                                                                                                                                                                                                      213-MSE                                      258-MSE                             


Chain F from PDB  Type:PROTEIN  Length:239
 aligned with PRP24_YEAST | P49960 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:251
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
          PRP24_YEAST    41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 291
               SCOP domains d2ghpf2 F:41-115 U4/U6 snRNA-associated-splicing factor PRP24              d2ghpf1 F:116-196 U4/U6 snRNA-associated-splicing factor PRP24                            d2ghpf3 F:206-291 U4/U6 snRNA-associated-s   plicing factor PRP24                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhh.eeeeeeee......eeeeeee.hhhhhhhhhh....ee..ee.eeee....eeeee......hhhhhhhhhhhh...eeeee..hhhhh....eeeeee.hhhhhhhhhhhhh..ee..ee.eeee....---------.....eeeeeee.....hhhhhhhhhhhhh.eeeee......---...eeeeeee.hhhhhhhhhhhh.eee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: F:41-116 UniProt: 41-116                                          RRM  PDB: F:117-195 UniProt: 117-195                                           --------------RRM  PDB: F:210-289 UniProt: 210-289                                            -- PROSITE
               Transcript 1 Exon 1.1  PDB: F:41-291 (gaps) UniProt: 1-444 [INCOMPLETE]                                                                                                                                                                                                  Transcript 1
                 2ghp F  41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWmTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL---------TLEGREImIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK---FNNCCAFmVFENKDSAERALQmNRSLLGNREISVSLADKKP 291
                                    50        60        70        80        90       100       110       120|      130       140       150       160       170       180       190     |   -     | 210  |    220       230       240      |  -|      260       270 |     280       290 
                                                                                                          121-MSE                                                                    196       206      |                               247 251      |           272-MSE               
                                                                                                                                                                                                      213-MSE                                      258-MSE                             


Chain G from PDB  Type:PROTEIN  Length:232
 aligned with PRP24_YEAST | P49960 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:251
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
          PRP24_YEAST    41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 291
               SCOP domains d2ghpg2 G:41-115 U4/U6 snRNA-associated-splicing factor PRP24              d2ghpg1 G:116-196 U4/U6 snRNA-assoc       iated-splicing factor PRP24                     d2ghpg3 G:206-291 U4/U6 snRNA-associated-s   plicing factor PRP24                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhh.eeeeeeee......eeeeeee.hhhhhhhhhhh...ee..ee.eeee....eeeee......hhhhhhhhhhhh...eeeee..-------..eeeeee.hhhhhhhhhhhhh..ee..ee.eeee....---------.....eeeeeee.....hhhhhhhhhhhhh.eeeee......---...eeeeeee.hhhhhhhhhhhh.eee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: G:41-116 UniProt: 41-116                                          RRM  PDB: G:117-195 UniProt: 117-195                                           --------------RRM  PDB: G:210-289 UniProt: 210-289                                            -- PROSITE
               Transcript 1 Exon 1.1  PDB: G:41-291 (gaps) UniProt: 1-444 [INCOMPLETE]                                                                                                                                                                                                  Transcript 1
                 2ghp G  41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWmTNFPPSYTQRNIRDLLQDINVVALSIRLP-------RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL---------TLEGREImIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK---FNNCCAFmVFENKDSAERALQmNRSLLGNREISVSLADKKP 291
                                    50        60        70        80        90       100       110       120|      130       140       150       160       170       180       190     |   -     | 210  |    220       230       240      |  -|      260       270 |     280       290 
                                                                                                          121-MSE                      150     158                                   196       206      |                               247 251      |           272-MSE               
                                                                                                                                                                                                      213-MSE                                      258-MSE                             


Chain H from PDB  Type:PROTEIN  Length:232
 aligned with PRP24_YEAST | P49960 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:251
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290 
          PRP24_YEAST    41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 291
               SCOP domains d2ghph2 H:41-115 U4/U6 snRNA-associated-splicing factor PRP24              d2ghph1 H:116-196 U4/U6 snRNA-assoc       iated-splicing factor PRP24                     d2ghph3 H:206-291 U4/U6 snRNA-associated-s   plicing factor PRP24                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhhhhhh.eeeeeeee.....eeeeeeee.hhhhhhhhhh....ee..ee.eeee....eeeee......hhhhhhhhhhhh...eeeee..-------..eeeeee.hhhhhhhhhhhhh..ee..ee.eeee....---------.....eeeeeee.....hhhhhhhhhhhhh.eeeee......---...eeeeeee.hhhhhhhhhhhh..ee..ee.eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM  PDB: H:41-116 UniProt: 41-116                                          RRM  PDB: H:117-195 UniProt: 117-195                                           --------------RRM  PDB: H:210-289 UniProt: 210-289                                            -- PROSITE
               Transcript 1 Exon 1.1  PDB: H:41-291 (gaps) UniProt: 1-444 [INCOMPLETE]                                                                                                                                                                                                  Transcript 1
                 2ghp H  41 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTECTLWmTNFPPSYTQRNIRDLLQDINVVALSIRLP-------RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL---------TLEGREImIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK---FNNCCAFmVFENKDSAERALQmNRSLLGNREISVSLADKKP 291
                                    50        60        70        80        90       100       110       120|      130       140       150       160       170       180       190     |   -     | 210  |    220       230       240      |  -|      260       270 |     280       290 
                                                                                                          121-MSE                      150     158                                   196       206      |                               247 251      |           272-MSE               
                                                                                                                                                                                                      213-MSE                                      258-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 24)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: Ferredoxin-like (1795)
(-)
Superfamily: RNA-binding domain, RBD (289)
(-)
Family: Canonical RBD (214)
(-)
Protein domain: U4/U6 snRNA-associated-splicing factor PRP24 (2)
(-)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (2)
1ad2ghpa1A:116-196
1bd2ghpa2A:41-115
1cd2ghpd2D:41-115
1dd2ghpd3D:206-291
1ed2ghpe1E:116-196
1fd2ghpe2E:41-115
1gd2ghpe3E:206-291
1hd2ghpf1F:116-196
1id2ghpf2F:41-115
1jd2ghpf3F:206-291
1kd2ghpg1G:116-196
1ld2ghpg2G:41-115
1md2ghpa3A:206-291
1nd2ghpg3G:206-291
1od2ghph1H:116-196
1pd2ghph2H:41-115
1qd2ghph3H:206-291
1rd2ghpb1B:116-196
1sd2ghpb2B:41-115
1td2ghpb3B:206-291
1ud2ghpc1C:116-196
1vd2ghpc2C:41-115
1wd2ghpc3C:206-291
1xd2ghpd1D:116-196

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GHP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GHP)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (PRP24_YEAST | P49960)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0017070    U6 snRNA binding    Interacting selectively and non-covalently with the U6 small nuclear RNA (U6 snRNA).
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0017069    snRNA binding    Interacting selectively and non-covalently with a small nuclear RNA (snRNA).
biological process
    GO:0008380    RNA splicing    The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
    GO:0006397    mRNA processing    Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
    GO:0000245    spliceosomal complex assembly    The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
    GO:0000244    spliceosomal tri-snRNP complex assembly    The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
cellular component
    GO:0005688    U6 snRNP    A ribonucleoprotein complex that contains small nuclear RNA U6.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRP24_YEAST | P49960: 2go9 2kh9 2l9w 4n0t 5tf6

(-) Related Entries Specified in the PDB File

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