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(-) Description

Title :  STRUCTURE OF HETEROTRIMERIC LYMPHOTOXIN LTA1B2 BOUND TO LYMPHOTOXIN BETA RECEPTOR LTBR AND ANTI-LTA FAB
 
Authors :  J. Sudhamsu, J. P. Yin, S. G. Hymowitz
Date :  26 Sep 13  (Deposition) - 13 Nov 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym. Unit :  A,B,D,H,L,R,S,V,W,X,Y,Z
Biol. Unit 1:  S,V,W,X,Y,Z  (1x)
Biol. Unit 2:  A,B,D,H,L,R  (1x)
Keywords :  Tnf, Tumor Necrosis Factor, Tnfr Receptor, Lymphotoxin Beta Receptor, Lymphotoxin Alpha, Lymphoid Development, Tumor Immunity, Auto- Immunity, Cytokine-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Sudhamsu, J. Yin, E. Y. Chiang, M. A. Starovasnik, J. L. Grogan, S. G. Hymowitz
Dimerization Of Lt Beta R By Lt Alpha 1 Beta 2 Is Necessary And Sufficient For Signal Transduction.
Proc. Natl. Acad. Sci. Usa V. 110 19896 2013
PubMed-ID: 24248355  |  Reference-DOI: 10.1073/PNAS.1310838110

(-) Compounds

Molecule 1 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 3
    Chains: S, R
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Gene: LTBR, D12S370, TNFCR, TNFR3, TNFRSF3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LYMPHOTOXIN-BETA RECEPTOR, TUMOR NECROSIS FACTOR C RECEPTOR, TUMOR NECROSIS FACTOR RECEPTOR 2-RELATED PROTEIN, TUMOR NECROSIS FACTOR RECEPTOR TYPE III, TNF-RIII, TNFR-III
 
Molecule 2 - ANTI-LYMPHOTOXIN ALPHA ANTIBODY LIGHT CHAIN
    Chains: V, L
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Cell Line: CHO
    Expression System Common: CHINESE HAMSTER
    Expression System Taxid: 10029
    Fragment: FAB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANTI-LT-ALPHA ANTIBODY LIGHT CHAIN
 
Molecule 3 - ANTI-LYMPHOTOXIN ALPHA ANTIBODY HEAVY CHAIN
    Chains: W, H
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Cell Line: CHO
    Expression System Common: CHINESE HAMSTER
    Expression System Taxid: 10029
    Fragment: FAB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANTI-LT-ALPHA ANTIBODY HEAVY CHAIN
 
Molecule 4 - LYMPHOTOXIN-ALPHA
    Chains: X, A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Gene: LTA, TNFB, TNFSF1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LT-ALPHA, TNF-BETA, TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 1
 
Molecule 5 - LYMPHOTOXIN-BETA
    Chains: Y, Z, B, D
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Gene: LTB, TNFC, TNFSF3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LT-BETA, TUMOR NECROSIS FACTOR C, TNF-C, TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 3

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABDHLRSVWXYZ
Biological Unit 1 (1x):       SVWXYZ
Biological Unit 2 (1x): ABDHLR      

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4MXW)

(-) Sites  (0, 0)

(no "Site" information available for 4MXW)

(-) SS Bonds  (25, 25)

Asymmetric Unit
No.Residues
1H:22 -H:96
2H:139 -H:195
3L:23 -L:88
4L:134 -L:194
5R:43 -R:58
6R:59 -R:72
7R:62 -R:80
8R:83 -R:98
9R:101 -R:116
10R:104 -R:124
11R:126 -R:139
12R:132 -R:142
13R:148 -R:167
14R:170 -R:185
15R:191 -R:210
16S:43 -S:58
17S:59 -S:72
18S:62 -S:80
19S:83 -S:98
20S:101 -S:116
21S:104 -S:124
22V:23 -V:88
23V:134 -V:194
24W:22 -W:96
25W:139 -W:195

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Ala S:114 -Pro S:115
2Thr Y:186 -Pro Y:187
3Thr B:186 -Pro B:187
4Ala R:114 -Pro R:115
5Phe W:145 -Pro W:146
6Glu W:147 -Pro W:148
7Phe H:145 -Pro H:146
8Glu H:147 -Pro H:148
9Thr V:94 -Pro V:95
10Tyr V:140 -Pro V:141
11Thr L:94 -Pro L:95
12Tyr L:140 -Pro L:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MXW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MXW)

(-) Exons   (0, 0)

(no "Exon" information available for 4MXW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.........ee......eee...eee..eee....eeeeeeeeeee..eeeeeeeeee......eeeeeeeeeee.........eeeeeeeeeee....eeeeeeehhhhh.......eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw A  61 KKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAFAL 205
                                    70        80        90       100       110     ||131       141       151       161       171       181       191       201    
                                                                                 116|                                                                             
                                                                                  128                                                                             


Chain B from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.....eee......ee....eee...eee....eeeeeeeeeee.......eeeeeeeee..eeeeeeeeee....eeeeeeeeeee....eeeeee.hhhhh......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mxw B  87 LPAAHLIGAPLKGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPQGRSVTLRSSLTPELLLEGAETVTPWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGAVMV 243
                                    96  ||   108       118       128       138       154       174       184  ||   207       217       227       237      
                                       99|                                         146|       163|          187|                                          
                                       102                                          153        174           201                                          


Chain D from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......eee......ee....eee...eee....eeeeeeeeeeeee......eeeeeeeee......eeeeeeeeee....eeeeeeeeeeeee....eeeeee.hhhhh......eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw D  87 LPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPPQGRSVTLRSSLYGPGTPELLLEGAETVTPPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGAVMV 243
                                    96       106       116       126       136       146||     161 ||    177       187|      208       218       228       238     
                                                                                      147|       163|              187|                                            
                                                                                       153        170               199                                            


Chain H from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee...ee.....eeeeee....hhhhh.eeeeee......eeeeee.......ee.hhhh..eeeeeehhh.eeeeee........eeeeeee........ee...eeeee........eeeee......eeeeeeeee.....eeee........eee...ee.....eeeeeeee...........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw H   1 EVQLVESGGGLVQPGGSLRLSCAASGYTFTSYVIHWVRQAPGKGLEWVGYNNPYNAGTNYNEKFKGRFTISSDKSKNTAYLQMNSLRAEDTAVYYCSRPTMLPWFAYWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP 212
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  


Chain L from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee.........eeeeee...........eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..eeee..eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw L   1 DIQMTQSPSSLSASVGDRVTITCRASQAVSSAVAWYQQKPGKAPKLLIYSASHRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQESYSTPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR 211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210 


Chain R from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee...........eee....ee..........ee....................................ee.........ee....ee..........ee..........eee........ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw R  43 CRDQEKEYYEPQHRICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVEIAPCTSKRKTQCRCCCTHCELLSDCPPGTEAVGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCK 211
                                    52        62        72        82        92       102    || 116       126||     147      |162       172       182       192       202         
                                                                                          107|           126||            154|                                                   
                                                                                           112            132|             160                                                   
                                                                                                           139                                                                   


Chain S from PDB  Type:PROTEIN  Length:79
                                                                                                               
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee......eee.....eeeee........eeee....ee..........ee..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 4mxw S  43 CRDQEKEYYEPQHRICCSRCPPGTYVSAKCSRIRDTVCATCAENSYNEHWNYLTICQLCRPCDPVEIAPCTSKRKTQCR 125
                                    52        62        72        82        92       102    || 116         
                                                                                          107|             
                                                                                           112             


Chain V from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...eeeee....eeeeeee.......eeeee.......eeeee...ee.......eeeeee..eeeeee..........eeeee............eeeee......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhhh.eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw V   1 DIQMTQSPSSLSASVGDRVTITCRASQAVSSAVAWYQQKPGKAPKLLIYSASHRYTGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQESYSTPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR 211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210 


Chain W from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee....eeeeeeeee..hhhhh.eeeeee......eeeeee.......ee.hhhh..eeeeee....eeeeeee.......eeeeeee........ee...eeeee........eeeee....eeeeeeeeee.....eeee........eee...ee.....eeeeeeeee.........eeeeeeehhhheeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw W   1 EVQLVESGGGLVQPGGSLRLSCAASGYTFTSYVIHWVRQAPGKGLEWVGYNNPYNAGTNYNEKFKGRFTISSDKSKNTAYLQMNSLRAEDTAVYYCSRPTMLPWFAYWGQGTLVTVSSASTKGPSVFPLAPSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 ||    141       151       161       171       181       191       201       211  
                                                                                                                                                             132|                                                                               
                                                                                                                                                              134                                                                               


Chain X from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.........ee......eee...ee....ee....eeeeeeeeeee..eeeeeeeeee......eeeee..eeee.........eeeeeeeeeee....eeeeeeehhhhh.......eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw X  61 KKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAFAL 205
                                    70        80        90       100       110     ||131       141       151       161       171       181       191       201    
                                                                                 116|                                                                             
                                                                                  128                                                                             


Chain Y from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....eee......ee....eee...eee....eeeeeeeeeeeee.....eeeeeeee....eeeeeeeee....eeeeeeeeeeeee....eeeeee.hhhhh.......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw Y  87 LPAAHLIGAPLKGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPQGRSVTLRSSLTPELLLEGAETVTPPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGAVMVGHH 246
                                    96  ||   108       118       128       138       154       174       184  ||   205       215       225       235       245 
                                       99|                                         146|       163|          187|                                               
                                       102                                          153        174           199                                               


Chain Z from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee...eeeee......ee....eee...eee....eeeeeeeeeee.......eeeeeeeee......eeeeeeeeee......eeeeeeeeeee....eeeeee.hhhhh.......eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mxw Z  87 LPAAHLIGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYLYCLVGYRGRAPQGRSVTLRSSLYGPGTPELLLEGAETVTPPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFGAVMV 243
                                    96       106       116       126       136       146|      162 ||    178       199       209       219       229       239    
                                                                                     146|        164|             187|                                            
                                                                                      153         171              199
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MXW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MXW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MXW)

(-) Gene Ontology  (45, 64)

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(no "Sites" information available for 4mxw)
 
  Cis Peptide Bonds
    Ala R:114 - Pro R:115   [ RasMol ]  
    Ala S:114 - Pro S:115   [ RasMol ]  
    Glu H:147 - Pro H:148   [ RasMol ]  
    Glu W:147 - Pro W:148   [ RasMol ]  
    Phe H:145 - Pro H:146   [ RasMol ]  
    Phe W:145 - Pro W:146   [ RasMol ]  
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    Tyr L:140 - Pro L:141   [ RasMol ]  
    Tyr V:140 - Pro V:141   [ RasMol ]  
 
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  4mxw
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  TNFB_HUMAN | P01374
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  TNFC_HUMAN | Q06643
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  TNR3_HUMAN | P36941
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNFB_HUMAN | P01374: 1tnr 4mxv
        TNR3_HUMAN | P36941: 1rf3

(-) Related Entries Specified in the PDB File

4mxv