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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF HETEROTRIMERIC LYMPHOTOXIN LTA1B2 BOUND TO LYMP BETA RECEPTOR LTBR AND ANTI-LTA FAB
Keywords TNF, TUMOR NECROSIS FACTOR, TNFR RECEPTOR, LYMPHOTOXIN BETA LYMPHOTOXIN ALPHA, LYMPHOID DEVELOPMENT, TUMOR IMMUNITY, AU IMMUNITY, CYTOKINE-IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4MXW     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    S 79 622 0
2  Protein   ANTI-LYMPHOTOXIN ALPHA ANTIBODY LIGHT CHAIN  V 211 1623 0
3  Protein   ANTI-LYMPHOTOXIN ALPHA ANTIBODY HEAVY CHAIN  W 212 1610 0
4  Protein   LYMPHOTOXIN-ALPHA  X 134 1055 0
5  Protein   LYMPHOTOXIN-BETA  Y 131 961 0
6  Protein   LYMPHOTOXIN-BETA  Z 134 988 0
7  Protein   LYMPHOTOXIN-ALPHA  A 134 1055 0
8  Protein   LYMPHOTOXIN-BETA  B 126 936 0
9  Protein   LYMPHOTOXIN-BETA  D 135 1004 0
10  Protein   ANTI-LYMPHOTOXIN ALPHA ANTIBODY HEAVY CHAIN  H 212 1604 0
11  Protein   ANTI-LYMPHOTOXIN ALPHA ANTIBODY LIGHT CHAIN  L 211 1623 0
12  Protein    R 149 1136 0
total       1868 14217 0

Proteins
Unit 1 CYS43 ARG44 ASP45 GLN46 GLU47 LYS48 GLU49 TYR50 TYR51 GLU52 PRO53 GLN54 HIS55 ARG56 ILE57 CYS58 CYS59 SER60 ARG61 CYS62 PRO63 PRO64 GLY65 THR66 TYR67 VAL68 SER69 ALA70 LYS71 CYS72 SER73 ARG74 ILE75 ARG76 ASP77 THR78 VAL79 CYS80 ALA81 THR82 CYS83 ALA84 GLU85 ASN86 SER87 TYR88 ASN89 GLU90 HIS91 TRP92 ASN93 TYR94 LEU95 THR96 ILE97 CYS98 GLN99 LEU100 CYS101 ARG102 PRO103 CYS104 ASP105 PRO106 VAL107 GLU112 ILE113 ALA114 PRO115 CYS116 THR117 SER118 LYS119 ARG120 LYS121 THR122 GLN123 CYS124 ARG125
Unit 2 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 ALA28 VAL29 SER30 SER31 ALA32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 ALA51 SER52 HIS53 ARG54 TYR55 THR56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLU90 SER91 TYR92 SER93 THR94 PRO95 TRP96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 3 GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 TYR27 THR28 PHE29 THR30 SER31 TYR32 VAL33 ILE34 HIS35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 GLY49 TYR50 ASN51 ASN52 PRO53 TYR54 ASN55 ALA56 GLY57 THR58 ASN59 TYR60 ASN61 GLU62 LYS63 PHE64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 SER72 ASP73 LYS74 SER75 LYS76 ASN77 THR78 ALA79 TYR80 LEU81 GLN82 MET83 ASN84 SER85 LEU86 ARG87 ALA88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 SER97 ARG98 PRO99 THR100 MET101 LEU102 PRO103 TRP104 PHE105 ALA106 TYR107 TRP108 GLY109 GLN110 GLY111 THR112 LEU113 VAL114 THR115 VAL116 SER117 SER118 ALA119 SER120 THR121 LYS122 GLY123 PRO124 SER125 VAL126 PHE127 PRO128 LEU129 ALA130 PRO131 SER132 THR134 ALA135 ALA136 LEU137 GLY138 CYS139 LEU140 VAL141 LYS142 ASP143 TYR144 PHE145 PRO146 GLU147 PRO148 VAL149 THR150 VAL151 SER152 TRP153 ASN154 SER155 GLY156 ALA157 LEU158 THR159 SER160 GLY161 VAL162 HIS163 THR164 PHE165 PRO166 ALA167 VAL168 LEU169 GLN170 SER171 SER172 GLY173 LEU174 TYR175 SER176 LEU177 SER178 SER179 VAL180 VAL181 THR182 VAL183 PRO184 SER185 SER186 SER187 LEU188 GLY189 THR190 GLN191 THR192 TYR193 ILE194 CYS195 ASN196 VAL197 ASN198 HIS199 LYS200 PRO201 SER202 ASN203 THR204 LYS205 VAL206 ASP207 LYS208 LYS209 VAL210 GLU211 PRO212 LYS213
Unit 4 LYS61 LYS62 PRO63 ALA64 ALA65 HIS66 LEU67 ILE68 GLY69 ASP70 PRO71 SER72 LYS73 GLN74 ASN75 SER76 LEU77 LEU78 TRP79 ARG80 ALA81 ASN82 THR83 ASP84 ARG85 ALA86 PHE87 LEU88 GLN89 ASP90 GLY91 PHE92 SER93 LEU94 SER95 ASN96 ASN97 SER98 LEU99 LEU100 VAL101 PRO102 THR103 SER104 GLY105 ILE106 TYR107 PHE108 VAL109 TYR110 SER111 GLN112 VAL113 VAL114 PHE115 SER116 PRO128 LEU129 TYR130 LEU131 ALA132 HIS133 GLU134 VAL135 GLN136 LEU137 PHE138 SER139 SER140 GLN141 TYR142 PRO143 PHE144 HIS145 VAL146 PRO147 LEU148 LEU149 SER150 SER151 GLN152 LYS153 MET154 VAL155 TYR156 PRO157 GLY158 LEU159 GLN160 GLU161 PRO162 TRP163 LEU164 HIS165 SER166 MET167 TYR168 HIS169 GLY170 ALA171 ALA172 PHE173 GLN174 LEU175 THR176 GLN177 GLY178 ASP179 GLN180 LEU181 SER182 THR183 HIS184 THR185 ASP186 GLY187 ILE188 PRO189 HIS190 LEU191 VAL192 LEU193 SER194 PRO195 SER196 THR197 VAL198 PHE199 PHE200 GLY201 ALA202 PHE203 ALA204 LEU205
Unit 5 LEU87 PRO88 ALA89 ALA90 HIS91 LEU92 ILE93 GLY94 ALA95 PRO96 LEU97 LYS98 GLY99 LEU102 GLY103 TRP104 GLU105 THR106 THR107 LYS108 GLU109 GLN110 ALA111 PHE112 LEU113 THR114 SER115 GLY116 THR117 GLN118 PHE119 SER120 ASP121 ALA122 GLU123 GLY124 LEU125 ALA126 LEU127 PRO128 GLN129 ASP130 GLY131 LEU132 TYR133 TYR134 LEU135 TYR136 CYS137 LEU138 VAL139 GLY140 TYR141 ARG142 GLY143 ARG144 ALA145 PRO146 GLN153 GLY154 ARG155 SER156 VAL157 THR158 LEU159 ARG160 SER161 SER162 LEU163 THR174 PRO175 GLU176 LEU177 LEU178 LEU179 GLU180 GLY181 ALA182 GLU183 THR184 VAL185 THR186 PRO187 PRO199 LEU200 TRP201 TYR202 THR203 SER204 VAL205 GLY206 PHE207 GLY208 GLY209 LEU210 VAL211 GLN212 LEU213 ARG214 ARG215 GLY216 GLU217 ARG218 VAL219 TYR220 VAL221 ASN222 ILE223 SER224 HIS225 PRO226 ASP227 MET228 VAL229 ASP230 PHE231 ALA232 ARG233 GLY234 LYS235 THR236 PHE237 PHE238 GLY239 ALA240 VAL241 MET242 VAL243 GLY244 HIS245 HIS246
Unit 6 LEU87 PRO88 ALA89 ALA90 HIS91 LEU92 ILE93 GLY94 ALA95 PRO96 LEU97 LYS98 GLY99 GLN100 GLY101 LEU102 GLY103 TRP104 GLU105 THR106 THR107 LYS108 GLU109 GLN110 ALA111 PHE112 LEU113 THR114 SER115 GLY116 THR117 GLN118 PHE119 SER120 ASP121 ALA122 GLU123 GLY124 LEU125 ALA126 LEU127 PRO128 GLN129 ASP130 GLY131 LEU132 TYR133 TYR134 LEU135 TYR136 CYS137 LEU138 VAL139 GLY140 TYR141 ARG142 GLY143 ARG144 ALA145 PRO146 GLN153 GLY154 ARG155 SER156 VAL157 THR158 LEU159 ARG160 SER161 SER162 LEU163 TYR164 GLY171 PRO172 GLY173 THR174 PRO175 GLU176 LEU177 LEU178 LEU179 GLU180 GLY181 ALA182 GLU183 THR184 VAL185 THR186 PRO187 PRO199 LEU200 TRP201 TYR202 THR203 SER204 VAL205 GLY206 PHE207 GLY208 GLY209 LEU210 VAL211 GLN212 LEU213 ARG214 ARG215 GLY216 GLU217 ARG218 VAL219 TYR220 VAL221 ASN222 ILE223 SER224 HIS225 PRO226 ASP227 MET228 VAL229 ASP230 PHE231 ALA232 ARG233 GLY234 LYS235 THR236 PHE237 PHE238 GLY239 ALA240 VAL241 MET242 VAL243
Unit 7 LYS61 LYS62 PRO63 ALA64 ALA65 HIS66 LEU67 ILE68 GLY69 ASP70 PRO71 SER72 LYS73 GLN74 ASN75 SER76 LEU77 LEU78 TRP79 ARG80 ALA81 ASN82 THR83 ASP84 ARG85 ALA86 PHE87 LEU88 GLN89 ASP90 GLY91 PHE92 SER93 LEU94 SER95 ASN96 ASN97 SER98 LEU99 LEU100 VAL101 PRO102 THR103 SER104 GLY105 ILE106 TYR107 PHE108 VAL109 TYR110 SER111 GLN112 VAL113 VAL114 PHE115 SER116 PRO128 LEU129 TYR130 LEU131 ALA132 HIS133 GLU134 VAL135 GLN136 LEU137 PHE138 SER139 SER140 GLN141 TYR142 PRO143 PHE144 HIS145 VAL146 PRO147 LEU148 LEU149 SER150 SER151 GLN152 LYS153 MET154 VAL155 TYR156 PRO157 GLY158 LEU159 GLN160 GLU161 PRO162 TRP163 LEU164 HIS165 SER166 MET167 TYR168 HIS169 GLY170 ALA171 ALA172 PHE173 GLN174 LEU175 THR176 GLN177 GLY178 ASP179 GLN180 LEU181 SER182 THR183 HIS184 THR185 ASP186 GLY187 ILE188 PRO189 HIS190 LEU191 VAL192 LEU193 SER194 PRO195 SER196 THR197 VAL198 PHE199 PHE200 GLY201 ALA202 PHE203 ALA204 LEU205
Unit 8 LEU87 PRO88 ALA89 ALA90 HIS91 LEU92 ILE93 GLY94 ALA95 PRO96 LEU97 LYS98 GLY99 LEU102 GLY103 TRP104 GLU105 THR106 THR107 LYS108 GLU109 GLN110 ALA111 PHE112 LEU113 THR114 SER115 GLY116 THR117 GLN118 PHE119 SER120 ASP121 ALA122 GLU123 GLY124 LEU125 ALA126 LEU127 PRO128 GLN129 ASP130 GLY131 LEU132 TYR133 TYR134 LEU135 TYR136 CYS137 LEU138 VAL139 GLY140 TYR141 ARG142 GLY143 ARG144 ALA145 PRO146 GLN153 GLY154 ARG155 SER156 VAL157 THR158 LEU159 ARG160 SER161 SER162 LEU163 THR174 PRO175 GLU176 LEU177 LEU178 LEU179 GLU180 GLY181 ALA182 GLU183 THR184 VAL185 THR186 PRO187 TRP201 TYR202 THR203 SER204 VAL205 GLY206 PHE207 GLY208 GLY209 LEU210 VAL211 GLN212 LEU213 ARG214 ARG215 GLY216 GLU217 ARG218 VAL219 TYR220 VAL221 ASN222 ILE223 SER224 HIS225 PRO226 ASP227 MET228 VAL229 ASP230 PHE231 ALA232 ARG233 GLY234 LYS235 THR236 PHE237 PHE238 GLY239 ALA240 VAL241 MET242 VAL243
Unit 9 LEU87 PRO88 ALA89 ALA90 HIS91 LEU92 ILE93 GLY94 ALA95 PRO96 LEU97 LYS98 GLY99 GLN100 GLY101 LEU102 GLY103 TRP104 GLU105 THR106 THR107 LYS108 GLU109 GLN110 ALA111 PHE112 LEU113 THR114 SER115 GLY116 THR117 GLN118 PHE119 SER120 ASP121 ALA122 GLU123 GLY124 LEU125 ALA126 LEU127 PRO128 GLN129 ASP130 GLY131 LEU132 TYR133 TYR134 LEU135 TYR136 CYS137 LEU138 VAL139 GLY140 TYR141 ARG142 GLY143 ARG144 ALA145 PRO146 PRO147 GLN153 GLY154 ARG155 SER156 VAL157 THR158 LEU159 ARG160 SER161 SER162 LEU163 TYR170 GLY171 PRO172 GLY173 THR174 PRO175 GLU176 LEU177 LEU178 LEU179 GLU180 GLY181 ALA182 GLU183 THR184 VAL185 THR186 PRO187 PRO199 LEU200 TRP201 TYR202 THR203 SER204 VAL205 GLY206 PHE207 GLY208 GLY209 LEU210 VAL211 GLN212 LEU213 ARG214 ARG215 GLY216 GLU217 ARG218 VAL219 TYR220 VAL221 ASN222 ILE223 SER224 HIS225 PRO226 ASP227 MET228 VAL229 ASP230 PHE231 ALA232 ARG233 GLY234 LYS235 THR236 PHE237 PHE238 GLY239 ALA240 VAL241 MET242 VAL243
Unit 10 GLU1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 TYR27 THR28 PHE29 THR30 SER31 TYR32 VAL33 ILE34 HIS35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 VAL48 GLY49 TYR50 ASN51 ASN52 PRO53 TYR54 ASN55 ALA56 GLY57 THR58 ASN59 TYR60 ASN61 GLU62 LYS63 PHE64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 SER72 ASP73 LYS74 SER75 LYS76 ASN77 THR78 ALA79 TYR80 LEU81 GLN82 MET83 ASN84 SER85 LEU86 ARG87 ALA88 GLU89 ASP90 THR91 ALA92 VAL93 TYR94 TYR95 CYS96 SER97 ARG98 PRO99 THR100 MET101 LEU102 PRO103 TRP104 PHE105 ALA106 TYR107 TRP108 GLY109 GLN110 GLY111 THR112 LEU113 VAL114 THR115 VAL116 SER117 SER118 ALA119 SER120 THR121 LYS122 GLY123 PRO124 SER125 VAL126 PHE127 PRO128 LEU129 ALA130 PRO131 SER132 GLY133 THR134 ALA135 ALA136 LEU137 GLY138 CYS139 LEU140 VAL141 LYS142 ASP143 TYR144 PHE145 PRO146 GLU147 PRO148 VAL149 THR150 VAL151 SER152 TRP153 ASN154 SER155 GLY156 ALA157 LEU158 THR159 SER160 GLY161 VAL162 HIS163 THR164 PHE165 PRO166 ALA167 VAL168 LEU169 GLN170 SER171 SER172 GLY173 LEU174 TYR175 SER176 LEU177 SER178 SER179 VAL180 VAL181 THR182 VAL183 PRO184 SER185 SER186 SER187 LEU188 GLY189 THR190 GLN191 THR192 TYR193 ILE194 CYS195 ASN196 VAL197 ASN198 HIS199 LYS200 PRO201 SER202 ASN203 THR204 LYS205 VAL206 ASP207 LYS208 LYS209 VAL210 GLU211 PRO212
Unit 11 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 ALA28 VAL29 SER30 SER31 ALA32 VAL33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 SER50 ALA51 SER52 HIS53 ARG54 TYR55 THR56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLU90 SER91 TYR92 SER93 THR94 PRO95 TRP96 THR97 PHE98 GLY99 GLN100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Unit 12 CYS43 ARG44 ASP45 GLN46 GLU47 LYS48 GLU49 TYR50 TYR51 GLU52 PRO53 GLN54 HIS55 ARG56 ILE57 CYS58 CYS59 SER60 ARG61 CYS62 PRO63 PRO64 GLY65 THR66 TYR67 VAL68 SER69 ALA70 LYS71 CYS72 SER73 ARG74 ILE75 ARG76 ASP77 THR78 VAL79 CYS80 ALA81 THR82 CYS83 ALA84 GLU85 ASN86 SER87 TYR88 ASN89 GLU90 HIS91 TRP92 ASN93 TYR94 LEU95 THR96 ILE97 CYS98 GLN99 LEU100 CYS101 ARG102 PRO103 CYS104 ASP105 PRO106 VAL107 GLU112 ILE113 ALA114 PRO115 CYS116 THR117 SER118 LYS119 ARG120 LYS121 THR122 GLN123 CYS124 ARG125 CYS126 CYS132 CYS139 THR140 HIS141 CYS142 GLU143 LEU144 LEU145 SER146 ASP147 CYS148 PRO149 PRO150 GLY151 THR152 GLU153 ALA154 VAL160 GLY161 LYS162 GLY163 ASN164 ASN165 HIS166 CYS167 VAL168 PRO169 CYS170 LYS171 ALA172 GLY173 HIS174 PHE175 GLN176 ASN177 THR178 SER179 SER180 PRO181 SER182 ALA183 ARG184 CYS185 GLN186 PRO187 HIS188 THR189 ARG190 CYS191 GLU192 ASN193 GLN194 GLY195 LEU196 VAL197 GLU198 ALA199 ALA200 PRO201 GLY202 THR203 ALA204 GLN205 SER206 ASP207 THR208 THR209 CYS210 LYS211

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany