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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM POLAROMONAS SP. JS666 (BPRO_4736), TARGET EFI-510156, WITH BOUND BENZOYL FORMATE, SPACE GROUP P6522
 
Authors :  M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wa S. Sojitra, S. Zhao, M. Stead, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, M. P. Jacobson, J. A. Ge S. C. Almo, Enzyme Function Initiative (Efi)
Date :  10 Sep 13  (Deposition) - 25 Sep 13  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
PubMed-ID: 25540822  |  Reference-DOI: 10.1021/BI501388Y

(-) Compounds

Molecule 1 - TRAP DICARBOXYLATE TRANSPORTER-DCTP SUBUNIT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BPRO_4736
    Organism Scientific: POLAROMONAS SP.
    Organism Taxid: 296591
    Strain: JS666 / ATCC BAA-500
    Synonym: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11731Ligand/IonBENZOYL-FORMIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:44 , THR A:94 , PHE A:97 , ARG A:168 , SER A:170 , VAL A:172 , TYR A:173 , GLY A:205 , TRP A:206 , PRO A:207BINDING SITE FOR RESIDUE 173 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MNI)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:225 -Pro A:226

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MNI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MNI)

(-) Exons   (0, 0)

(no "Exon" information available for 4MNI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhh....eeeehhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhheeeeeeee....eeeee............eeeehhhhhhhhhhh..eeee.hhhhhhhhhhh....eeeee.......hhhhhh.eee........eeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mni A  28 QEVTLRLVSAFPENGIYVQRLLPWIAKVNAEGKGVLQINFLGGPKAIPTFEAGNAVKTGVVDMAMNTGAFYTNVMPEADFLKLTQIPVAEQRKNGAFDAINKVWNEKGNTQYLARMVENQPFHIYTNKKIDKPDLSGQKIRISPVYRDFFQALNANVVTTPPGEVYTALERGVVDGYGWPIGGIFDLNWQEKTKFRVDPGFYDAEVSLTMNLPAYKKLTDAQRNYLQKQLLVLEAENTFWTRYGNVETARQETAGIQTIKFDAATSKAFREKAYEVGWAGAMKQSPEVAARFKTLFSKAENLYF 331
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MNI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MNI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MNI)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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    Asp A:225 - Pro A:226   [ RasMol ]  
 

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 Related Entries

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UniProtKB/Swiss-Prot
        DCTP2_POLSJ | Q122C7: 4mnc

(-) Related Entries Specified in the PDB File

4mnc RELATED ID: EFI-510156 RELATED DB: TARGETTRACK