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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM POLAROMONAS SP. JS666 (BPRO_4736), TARGET EFI-510156, WITH BOUND BENZOYL FORMATE, SPACE GROUP P21
 
Authors :  M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wa S. Sojitra, S. Zhao, M. Stead, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, M. P. Jacobson, J. A. Ge S. C. Almo, Enzyme Function Initiative (Efi)
Date :  10 Sep 13  (Deposition) - 25 Sep 13  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
PubMed-ID: 25540822  |  Reference-DOI: 10.1021/BI501388Y

(-) Compounds

Molecule 1 - TRAP DICARBOXYLATE TRANSPORTER-DCTP SUBUNIT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BPRO_4736
    Organism Scientific: POLAROMONAS SP.
    Organism Taxid: 296591
    Strain: JS666 / ATCC BAA-500
    Synonym: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
11732Ligand/IonBENZOYL-FORMIC ACID
2SO43Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:44 , ALA A:96 , PHE A:97 , ARG A:168 , SER A:170 , VAL A:172 , TYR A:173 , GLY A:205 , TRP A:206 , PRO A:207 , VAL A:233BINDING SITE FOR RESIDUE 173 A 401
2AC2SOFTWAREPHE A:266 , ARG A:269 , TYR A:270 , VAL A:273 , HOH A:543 , HOH A:596 , HOH A:644BINDING SITE FOR RESIDUE 173 A 402
3AC3SOFTWAREASP A:289 , ALA A:290 , HOH A:651 , HOH A:968 , HOH A:987 , HOH A:1044BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWARELYS A:129 , HOH A:976BINDING SITE FOR RESIDUE SO4 A 404
5AC5SOFTWAREPRO A:71 , GLY A:190 , HOH A:529 , HOH A:698 , HOH A:766 , HOH A:978BINDING SITE FOR RESIDUE SO4 A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MNC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:225 -Pro A:226

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MNC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MNC)

(-) Exons   (0, 0)

(no "Exon" information available for 4MNC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhh....eeeehhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhheeeeeeee....eeeee............eeeehhhhhhhhhhh..eeee.hhhhhhhhhhh....eeeee.......hhhhhh.eee........eeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mnc A  28 QEVTLRLVSAFPENGIYVQRLLPWIAKVNAEGKGVLQINFLGGPKAIPTFEAGNAVKTGVVDMAMNTGAFYTNVMPEADFLKLTQIPVAEQRKNGAFDAINKVWNEKGNTQYLARMVENQPFHIYTNKKIDKPDLSGQKIRISPVYRDFFQALNANVVTTPPGEVYTALERGVVDGYGWPIGGIFDLNWQEKTKFRVDPGFYDAEVSLTMNLPAYKKLTDAQRNYLQKQLLVLEAENTFWTRYGNVETARQETAGIQTIKFDAATSKAFREKAYEVGWAGAMKQSPEVAARFKTLFSKAENLYFQ 332
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MNC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MNC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MNC)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:225 - Pro A:226   [ RasMol ]  
 

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 Related Entries

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UniProtKB/Swiss-Prot
        DCTP2_POLSJ | Q122C7: 4mni

(-) Related Entries Specified in the PDB File

4mni RELATED ID: EFI-510156 RELATED DB: TARGETTRACK