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(-) Description

Title :  CRYSTAL STRUCTURE OF SPERMIDINE N-ACETYLTRANSFERASE FROM VIBRIO CHOLERAE IN COMPLEX WITH POLYAMINE
 
Authors :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, M. L. Kuhn, W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  03 Sep 13  (Deposition) - 25 Sep 13  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (4x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Spermidine, N-Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, M. L. Kuhn, W. F. Anderson
Crystal Structure Of Spermidine N-Acetyltransferase From Vibrio Cholerae In Complex With Polyamine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SPERMIDINE N1-ACETYLTRANSFERASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VC_A0947
    Organism Scientific: VIBRIO CHOLERAE O1 BIOVAR EL TOR
    Organism Taxid: 243277
    Strain: ATCC 39315 / EL TOR INABA N16961

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (4x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1EOH6Ligand/IonETHANOL
2SPM4Ligand/IonSPERMINE
Biological Unit 1 (2, 40)
No.NameCountTypeFull Name
1EOH24Ligand/IonETHANOL
2SPM16Ligand/IonSPERMINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:22 , MET A:28 , GLU A:33 , GLU A:34 , TYR A:36 , GLU A:37 , GLU A:41 , HOH A:302 , HOH A:326 , HOH A:329 , HIS B:49 , ILE B:50 , ASP B:52 , GLU B:55 , HOH B:361BINDING SITE FOR RESIDUE SPM A 201
2AC2SOFTWARETYR A:30 , TRP A:31 , GLU A:33 , GLU A:84 , PHE A:85 , GLN A:86 , ILE A:87 , LEU A:121 , HIS A:122 , HOH A:381BINDING SITE FOR RESIDUE SPM A 202
3AC3SOFTWAREHOH A:308 , SER C:172BINDING SITE FOR RESIDUE EOH A 203
4AC4SOFTWARELYS A:48BINDING SITE FOR RESIDUE EOH A 204
5AC5SOFTWAREASN B:22 , MET B:28 , GLU B:33 , GLU B:34 , TYR B:36 , GLU B:41 , HOH B:301 , HOH B:351 , HOH B:404 , HIS C:49 , ILE C:50 , ASP C:52 , GLU C:55 , HOH C:302BINDING SITE FOR RESIDUE SPM B 201
6AC6SOFTWARELYS B:48BINDING SITE FOR RESIDUE EOH B 202
7AC7SOFTWAREHIS A:49 , ILE A:50 , ASP A:52 , GLU A:55 , HOH A:341 , HOH A:347 , ASN C:22 , MET C:28 , GLU C:33 , GLU C:34 , TYR C:36 , GLU C:37 , GLU C:41 , HOH C:303 , HOH C:394BINDING SITE FOR RESIDUE SPM C 201
8AC8SOFTWARETRP C:31 , GLN C:86BINDING SITE FOR RESIDUE EOH C 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MJ8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MJ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MJ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MJ8)

(-) Exons   (0, 0)

(no "Exon" information available for 4MJ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains d4mj8a_ A: automated matches                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh......eeeeee.....eeeeeeeeeee....eeeeeeee.hhhh...hhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mj8 A   2 NSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVEDAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLNR 171
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171


Chain B from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains d4mj8b_ B: automated matches                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......eeeeee.....eeeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeeehhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mj8 B   3 SQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVEDAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLN 170
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162        


Chain C from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains d4mj8c_ C: automated matches                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh......eeeeee.....eeeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mj8 C   4 QLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVEDAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLNRSE 173
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MJ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MJ8)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATDA_VIBCH | Q9KL03: 4jjx 4jly 4mhd 4mi4 4ncz 4r57 4r87 4ygo 5cnp 5ug4

(-) Related Entries Specified in the PDB File

3eg7 4jjx 4jly 4k4l