4MEG - JenaLib

Title :   IN VITRO EVOLVED GLMS RIBOZYME TRIPLE MUTANT, MAGNESIUM ION COMPLEX

Authors :   M. W. L. Lau, A. R. Ferre-D'Amare

Date :   26 Aug 13 (Deposition) - 16 Oct 13 (Release) - 27 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Glms Ribozyme Fold, Rna, Self-Cleavage, Transesterification, Metalloribozyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. W. Lau, A. R. Ferre-D'Amare
An In Vitro Evolved Glms Ribozyme Has The Wild-Type Fold Bu Loses Coenzyme Dependence.
Nat. Chem. Biol. V. 9 805 2013
PubMed-ID: 24096303 | Reference-DOI: 10.1038/NCHEMBIO.1360

Compounds

Molecule 1 - GLMS TRIPLE MUTANT RIBOZYME
	Chains	:	A
	Engineered	:	YES
	Other Details	:	THIS IS A MUTANT RIBOZYME CONSTRUCT FROM THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME
	Synthetic	:	YES

Molecule 2 - (121-MER) RIBOZYME
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 16)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	G A:1 , C A:2 , A B:16 , C B:17 , G B:18	BINDING SITE FOR RESIDUE MG B 201
02	AC2	SOFTWARE	C B:59	BINDING SITE FOR RESIDUE MG B 202
03	AC3	SOFTWARE	G B:54	BINDING SITE FOR RESIDUE MG B 203
04	AC4	SOFTWARE	A B:85 , A B:86 , U B:107	BINDING SITE FOR RESIDUE MG B 204
05	AC5	SOFTWARE	G B:101 , U B:102	BINDING SITE FOR RESIDUE MG B 205
06	AC6	SOFTWARE	A B:87 , G B:104	BINDING SITE FOR RESIDUE MG B 206
07	AC7	SOFTWARE	G B:75 , G B:118 , G B:119	BINDING SITE FOR RESIDUE MG B 207
08	AC8	SOFTWARE	C B:89 , C B:90 , U B:102 , G B:104 , C B:105	BINDING SITE FOR RESIDUE MG B 208
09	AC9	SOFTWARE	U B:84 , A B:85	BINDING SITE FOR RESIDUE MG B 209
10	BC1	SOFTWARE	G B:67 , A B:68	BINDING SITE FOR RESIDUE MG B 210
11	BC2	SOFTWARE	A B:85 , A B:108 , G B:109 , HOH B:301	BINDING SITE FOR RESIDUE MG B 211
12	BC3	SOFTWARE	A B:16 , C B:41 , G B:42	BINDING SITE FOR RESIDUE MG B 212
13	BC4	SOFTWARE	G B:43 , G B:54 , C B:66	BINDING SITE FOR RESIDUE MG B 213
14	BC5	SOFTWARE	G B:20 , G B:21 , A B:31 , U B:48	BINDING SITE FOR RESIDUE MG B 214
15	BC6	SOFTWARE	G B:120 , C B:121	BINDING SITE FOR RESIDUE MG B 215

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA/RNA  Length:18
                                                  
                 4meg A   0 AGCGCCUGGACUUAAAGC  17
                                     9

Chain B from PDB  Type:RNA  Length:121
                                                                                                                                                         
                 4meg B   6 CUUUAAGUUGACGAGGGCAGGGUUAAACGAGACAUCGGCGAGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACUGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA 126
                                    15        25        35        45        55        65        75        85        95       105       115       125

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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