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Sequence, Chains, Asymmetric and Biological Units

Title IN VITRO EVOLVED GLMS RIBOZYME TRIPLE MUTANT, MAGNESIUM ION
Keywords GLMS RIBOZYME FOLD, RNA, SELF-CLEAVAGE, TRANSESTERIFICATION, METALLORIBOZYME
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4MEG     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  DNA/RNA    A 18 340 0
2  RNA    B 121 2603 0
3  Ligand   GLMS TRIPLE MUTANT RIBOZYME  A 1 0 1
4  Ligand   (121-MER) RIBOZYME  B 15 0 15
5 Water     1 0 1
total       156 2943 17

Nucleic acids
Unit 1 DA0 G1 C2 G3 C4 C5 U6 G7 G8 A9 C10 U11 U12 A13 A14 A15 G16 C17
Unit 2 C6 U7 U8 U9 A10 A11 G12 U13 U14 G15 A16 C17 G18 A19 G20 G21 G22 C23 A24 G25 G26 G27 U28 U29 A30 A31 A32 C33 G34 A35 G36 A37 C38 A39 U40 C41 G42 G43 C44 G45 A46 G47 U48 G49 C50 C51 C52 U53 G54 C55 G56 G57 U58 C59 U60 U61 C62 C63 U64 G65 C66 G67 A68 C69 C70 G71 U72 U73 A74 G75 A76 G77 G78 A79 C80 U81 G82 G83 U84 A85 A86 A87 A88 C89 C90 A91 C92 A93 G94 G95 C96 G97 A98 C99 U100 G101 U102 G103 G104 C105 A106 U107 A108 G109 A110 G111 C112 A113 G114 U115 C116 C117 G118 G119 G120 C121 A122 G123 G124 A125 A126

Ligands
Unit 3 MG101
Unit 4 MG201 MG202 MG203 MG204 MG205 MG206 MG207 MG208 MG209 MG210 MG211 MG212 MG213 MG214 MG215

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany