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(-) Description

Title :  HEDYCARYOL SYNTHASE IN COMPLEX WITH NEROLIDOL
 
Authors :  P. Baer, P. Rabe, C. Cirton, C. Oliveira Mann, N. Kaufmann, M. Groll, J.
Date :  21 Aug 13  (Deposition) - 29 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Cyclase, Terpenoid, Terpene Alpha Domain Class I, Helix Break, Helix Dipol, Surrogate, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Baer, P. Rabe, C. A. Citron, C. C. De Oliveira Mann, N. Kaufmann, M. Groll, J. S. Dickschat
Hedycaryol Synthase In Complex With Nerolidol Reveals Terpene Cyclase Mechanism.
Chembiochem V. 15 213 2014
PubMed-ID: 24399794  |  Reference-DOI: 10.1002/CBIC.201300708

(-) Compounds

Molecule 1 - PUTATIVE SESQUITERPENE CYCLASE
    Chains: A
    EC Number: 4.2.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28C
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: KSE_00200T, KSE_76540T
    Organism Scientific: KITASATOSPORA SETAE
    Organism Taxid: 452652
    Strain: ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
128U1Ligand/Ion(3R,6E)-3,7,11-TRIMETHYLDODECA-1,6,10-TRIEN-3-OL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:55 , VAL A:179 , ILE A:217 , ASN A:221 , GLN A:306BINDING SITE FOR RESIDUE 28U A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MC3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MC3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MC3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MC3)

(-) Exons   (0, 0)

(no "Exon" information available for 4MC3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mc3 A   4 FEIPDFYVPFPLECNPHLEEASRAMWEWIDANGLAPTERARDRMRRTGADLSGAYVWPRADLDTLTIGLKWIALTFRIDDQILPARMTAIDELRGTLHGLSPTARALGALWQETALGRPATWCDAFIGHFEAFLQTYTTEAGLNAHGAGLRLDDYLDRRMYSVGMPWLWDLDELRLPIFLPGSVRTCGPMNKLRRAGALHIALVNDVFSVYQHNAVTIIREAQGCSLQEAVDQVAVLVEAQLHTVLQARQELLEELDRQALPSRAREAAVDYAANVAANLSGQLVWH 310
                                    13        23        33        43        53        63        73        83 ||    101       111|      126       136       146       156       166       176       186       196       206       216       226|      243       253       263       273       283       293       303       
                                                                                                            85|              111|                                                                                                          226|                                                                            
                                                                                                             94               117                                                                                                           234
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MC3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MC3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MC3)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E4MYY0_KITSK | E4MYY0: 4mc0 4mc8

(-) Related Entries Specified in the PDB File

1hm4 N219L PENTALENENE SYNTHASE
4mc0 HEDYCARYOL SYNTHASE APO
4mc8