Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  SOYBEAN ATP SULFURYLASE
 
Authors :  J. Herrmann, G. E. Ravilious, S. E. Mckinney, C. S. Westfall, S. G. Lee, H. B. Krishnan, J. M. Jez
Date :  16 Aug 13  (Deposition) - 12 Mar 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,H  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  D,E  (1x)
Biol. Unit 4:  F,G  (1x)
Keywords :  Atp Sulfurylase, Sulfur Metabolism, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Herrmann, G. E. Ravilious, S. E. Mckinney, C. S. Westfall, S. G. Lee, P. Baraniecka, M. Giovannetti, S. Kopriva, H. B. Krishnan, J. M. Jez
Structure And Mechanism Of Soybean Atp Sulfurylase And The Committed Step In Plant Sulfur Assimilation.
J. Biol. Chem. V. 289 10919 2014
PubMed-ID: 24584934  |  Reference-DOI: 10.1074/JBC.M113.540401

(-) Compounds

Molecule 1 - ATP SULFURYLASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.7.7.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 49-449
    Organism Common: SOYBEANS
    Organism Scientific: GLYCINE MAX
    Organism Taxid: 3847

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A      H
Biological Unit 2 (1x):  BC     
Biological Unit 3 (1x):    DE   
Biological Unit 4 (1x):      FG 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1ADX8Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ADX2Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1ADX2Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1ADX2Ligand/IonADENOSINE-5'-PHOSPHOSULFATE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1ADX2Ligand/IonADENOSINE-5'-PHOSPHOSULFATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:245 , GLN A:246 , LEU A:247 , ARG A:248 , ASN A:249 , HIS A:255 , LEU A:258 , MET A:322 , VAL A:347 , GLY A:348 , ARG A:349 , PRO A:351 , ALA A:352 , ARG A:388 , VAL A:389 , ALA A:390 , HOH A:1027BINDING SITE FOR RESIDUE ADX A 900
2AC2SOFTWAREPHE B:245 , GLN B:246 , LEU B:247 , ARG B:248 , ASN B:249 , HIS B:255 , LEU B:258 , MET B:322 , VAL B:347 , GLY B:348 , ARG B:349 , PRO B:351 , ALA B:352 , ARG B:388 , VAL B:389 , ALA B:390 , HOH B:1004 , HOH B:1008 , HOH B:1109BINDING SITE FOR RESIDUE ADX B 900
3AC3SOFTWAREPHE C:245 , GLN C:246 , LEU C:247 , ARG C:248 , ASN C:249 , HIS C:255 , LEU C:258 , MET C:322 , GLY C:348 , ARG C:349 , PRO C:351 , ALA C:352 , ARG C:388 , VAL C:389 , ALA C:390 , HOH C:1014 , HOH C:1021 , HOH C:1064 , HOH C:1134BINDING SITE FOR RESIDUE ADX C 900
4AC4SOFTWAREPHE D:245 , GLN D:246 , LEU D:247 , ARG D:248 , ASN D:249 , HIS D:255 , LEU D:258 , MET D:322 , VAL D:347 , GLY D:348 , ARG D:349 , PRO D:351 , ALA D:352 , ARG D:388 , VAL D:389 , ALA D:390 , HOH D:1019 , HOH D:1032 , HOH D:1066 , HOH D:1084BINDING SITE FOR RESIDUE ADX D 900
5AC5SOFTWAREPHE E:245 , GLN E:246 , LEU E:247 , ARG E:248 , ASN E:249 , HIS E:255 , LEU E:258 , MET E:322 , GLY E:348 , ARG E:349 , PRO E:351 , ALA E:352 , ARG E:388 , VAL E:389 , ALA E:390 , HOH E:1095 , HOH E:1106BINDING SITE FOR RESIDUE ADX E 900
6AC6SOFTWAREPHE F:245 , GLN F:246 , LEU F:247 , ARG F:248 , ASN F:249 , HIS F:255 , LEU F:258 , MET F:322 , GLY F:348 , ARG F:349 , PRO F:351 , ALA F:352 , ARG F:388 , VAL F:389 , ALA F:390 , HOH F:1036BINDING SITE FOR RESIDUE ADX F 900
7AC7SOFTWAREPHE G:245 , GLN G:246 , LEU G:247 , ARG G:248 , ASN G:249 , HIS G:255 , LEU G:258 , MET G:322 , GLY G:348 , ARG G:349 , PRO G:351 , ALA G:352 , ARG G:388 , VAL G:389 , ALA G:390 , HOH G:1018BINDING SITE FOR RESIDUE ADX G 900
8AC8SOFTWAREPHE H:245 , GLN H:246 , LEU H:247 , ARG H:248 , ASN H:249 , HIS H:255 , LEU H:258 , MET H:322 , VAL H:347 , GLY H:348 , ARG H:349 , PRO H:351 , ALA H:352 , ARG H:388 , VAL H:389 , ALA H:390BINDING SITE FOR RESIDUE ADX H 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MAF)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Thr A:99 -Pro A:100
2Ser A:156 -Lys A:157
3Thr B:99 -Pro B:100
4Thr C:99 -Pro C:100
5Thr D:99 -Pro D:100
6Thr E:99 -Pro E:100
7Asp E:155 -Ser E:156
8Ser E:156 -Lys E:157
9Thr F:99 -Pro F:100
10Thr G:99 -Pro G:100
11Asp H:64 -Phe H:65
12Thr H:99 -Pro H:100

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MAF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MAF)

(-) Exons   (0, 0)

(no "Exon" information available for 4MAF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mafa1 A:48-218 automated matches                                                                                                                                         d4mafa2 A:219-449 automated matches                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhh..........hhhhhhhhhhhheee.....eee.......eehhhhhhhhh....eeee.....eeeeeeeeeeee.hhhhhhhhhhh.....hhhhhhhh.....eeeeeeeee.........hhhhh.hhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh...hhh.eee.........hhhhhhhhhhhhhhhh...eeee...................hhhhhhhhhh......eeee...eeee.....eee....hhh.ee..hhhhhhhhhhh.........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4maf A  48 MLIEPDGGKLVELVVTDFERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLKGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHRIGDNKKVALFDSKGDPVAILNNIEIYKHPKEERIARTWGTIAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPTQLRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFISGTKMRTLARNKESPPDGFMCPGGWKVLVDYYDSLV 449
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447  


Chain B from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4mafb1 B:48-218 automated matches                                                                                                                                         d4mafb2 B:219-451 automated matches                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhh..eee.hhhhhhhhhhhhh..........hhhhhhhhhhhheee.....eee......eeehhhhhhhhh....eeee.....eeeeeeeeeeee.hhhhhhhhhhh.....hhhhhhhh.....eeeeeeeee.........hhhhh.hhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh...hhh.eee.........hhhhhhhhhhhhhhhhh..eeee...................hhhhhhhhhh......eeee...eeee.....eee....hhh.ee..hhhhhhhhhh..........hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4maf B  48 MLIEPDGGKLVELVVTDFERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLKGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHRIGDNKKVALFDSKGDPVAILNNIEIYKHPKEERIARTWGTIAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPTQLRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFISGTKMRTLARNKESPPDGFMCPGGWKVLVDYYDSLVLS 451
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447    


Chain C from PDB  Type:PROTEIN  Length:403
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4mafc1 C:48-218 automated matches                                                                                                                                         d4mafc2 C:219-450 automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhh..eee.hhhhhhhhhhhhh..........hhhhhhhhhhhheee.....eee......eeehhhhhhhhh....eeee.....eeeeeeeeeeee.hhhhhhhhhhh.....hhhhhhhh.....eeeeeeeee.........hhhhh.hhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhhhhh...hhh.eee.........hhhhhhhhhhhhhhhh...eeee...................hhhhhhhhhh......eeee...eeee....eeee....hhh.ee..hhhhhhhhhhh.........hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4maf C  48 MLIEPDGGKLVELVVTDFERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLKGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHRIGDNKKVALFDSKGDPVAILNNIEIYKHPKEERIARTWGTIAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPTQLRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFISGTKMRTLARNKESPPDGFMCPGGWKVLVDYYDSLVL 450
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447   


Chain D from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4mafd1 D:48-218 automated matches                                                                                                                                         d4mafd2 D:219-448 automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhh...eeeehhhhhhhhhhhhh..........hhhhhhhhhhhheee.....eee......eeehhhhhhhhh...eeeeee....eeeeeeeeeeee.hhhhhhhhhhh.....hhhhhhhh.....eeeeeeeee.........hhhhh.hhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhhhhh...hhh.eee.........hhhhhhhhhhhhhhhhh..eeee...................hhhhhhhhhh......eeee...eeee.....eee....hhh.ee..hhhhhhhhhhh.........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4maf D  48 MLIEPDGGKLVELVVTDFERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLKGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHRIGDNKKVALFDSKGDPVAILNNIEIYKHPKEERIARTWGTIAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPTQLRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFISGTKMRTLARNKESPPDGFMCPGGWKVLVDYYDSL 448
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447 


Chain E from PDB  Type:PROTEIN  Length:403
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4mafe1 E:48-218 automated matches                                                                                                                                         d4mafe2 E:219-450 automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhh..eee.hhhhhhhhhhhhhh.........hhhhhhhhhhhheee.....eee......eeehhhhhhhhh...eeeeee...eeeeeeeeeeeee.hhhhhhhhhhh.....hhhhhhhh.....eeeeeeeee.........hhhhh.hhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh...hhh.eee.........hhhhhhhhhhhhhhhh...eeee...................hhhhhhhhhh......eeee...eeee.....eee....hhh.ee..hhhhhhhhhhh.........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4maf E  48 MLIEPDGGKLVELVVTDFERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLKGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHRIGDNKKVALFDSKGDPVAILNNIEIYKHPKEERIARTWGTIAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPTQLRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFISGTKMRTLARNKESPPDGFMCPGGWKVLVDYYDSLVL 450
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447   


Chain F from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4maff1 F:48-218 automated matches                                                                                                                                         d4maff2 F:219-448 automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhh..eee.hhhhhhhhhhhhh..........hhhhhhhhhhhheee.....eee.......eehhhhhhhhh....eeee.....eeeeeeeeeeee.hhhhhhhhhhh.....hhhhhhhh.....eeeeeeeee.........hhhhh.hhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhh...hhh.eee.........hhhhhhhhhhhhhhhh...eeee...................hhhhhhhhhh......eeee...eeee....eeee....hhh.ee..hhhhhhhhhhh.........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4maf F  48 MLIEPDGGKLVELVVTDFERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLKGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHRIGDNKKVALFDSKGDPVAILNNIEIYKHPKEERIARTWGTIAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPTQLRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFISGTKMRTLARNKESPPDGFMCPGGWKVLVDYYDSL 448
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447 


Chain G from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4mafg1 G:48-218 automated matches                                                                                                                                         d4mafg2 G:219-451 automated matches                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.........hhhhhhhhhhh..eee.hhhhhhhhhhhhh..........hhhhhhhhhhhheee.....eee......eeehhhhhhhh.....eeee.....eeeeeeeeeeee.hhhhhhhhhhh.....hhhhhhhh.....eeeeeeeee.........hhhhh.hhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhhhhh...hhh.eee.........hhhhhhhhhhhhhhhh...eeee...................hhhhhhhhhh......eeee...eeee.....eee....hhh.ee..hhhhhhhhhh..........hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4maf G  48 MLIEPDGGKLVELVVTDFERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLKGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHRIGDNKKVALFDSKGDPVAILNNIEIYKHPKEERIARTWGTIAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPTQLRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFISGTKMRTLARNKESPPDGFMCPGGWKVLVDYYDSLVLS 451
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447    


Chain H from PDB  Type:PROTEIN  Length:381
                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4mafh1 H:49-218 automated matches                                                                                                                                        d4mafh2 H:219-445 automated matches                                                                                                                                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhh.eee.hhhhhhhhhhhhhh.........hhhhhhhhhhhheee.....eee......eeehhhhhhhhh...eeeee.....eeeeeeeeeeee.hhhhhhhhhhh.....hhhhhh.......eeeeeeeee...............hhhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhh...hhh.eee.........hhhhhhhhhhhhhhhh...eeee...................hhhhhhhhhh......eeee...eeee.....eee....hhh.ee......hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4maf H  49 LIEPDGGKLVELVVTDFERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLKGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHRIGDNKKVALFDSKGDPVAILNNIEIYKHPKEERIARTWGTIAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPTQLRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFPDGFMCPGGWKVLVDYY 445
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408   ||  434       444 
                                                                                                                                                                                                                                                                                                                                                                                                     412|                
                                                                                                                                                                                                                                                                                                                                                                                                      429
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MAF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MAF)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ADX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asp E:155 - Ser E:156   [ RasMol ]  
    Asp H:64 - Phe H:65   [ RasMol ]  
    Ser A:156 - Lys A:157   [ RasMol ]  
    Ser E:156 - Lys E:157   [ RasMol ]  
    Thr A:99 - Pro A:100   [ RasMol ]  
    Thr B:99 - Pro B:100   [ RasMol ]  
    Thr C:99 - Pro C:100   [ RasMol ]  
    Thr D:99 - Pro D:100   [ RasMol ]  
    Thr E:99 - Pro E:100   [ RasMol ]  
    Thr F:99 - Pro F:100   [ RasMol ]  
    Thr G:99 - Pro G:100   [ RasMol ]  
    Thr H:99 - Pro H:100   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4maf
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8SAG1_SOYBN | Q8SAG1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  2.7.7.4
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q8SAG1_SOYBN | Q8SAG1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4MAF)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4MAF)