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4MAF
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1 (277 KB)
Biol.Unit 2 (280 KB)
Biol.Unit 3 (283 KB)
Biol.Unit 4 (280 KB)
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(1)
Title
:
SOYBEAN ATP SULFURYLASE
Authors
:
J. Herrmann, G. E. Ravilious, S. E. Mckinney, C. S. Westfall, S. G. Lee, H. B. Krishnan, J. M. Jez
Date
:
16 Aug 13 (Deposition) - 12 Mar 14 (Release) - 30 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.48
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,H (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: D,E (1x)
Biol. Unit 4: F,G (1x)
Keywords
:
Atp Sulfurylase, Sulfur Metabolism, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Herrmann, G. E. Ravilious, S. E. Mckinney, C. S. Westfall, S. G. Lee, P. Baraniecka, M. Giovannetti, S. Kopriva, H. B. Krishnan, J. M. Jez
Structure And Mechanism Of Soybean Atp Sulfurylase And The Committed Step In Plant Sulfur Assimilation.
J. Biol. Chem. V. 289 10919 2014
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: ADENOSINE-5'-PHOSPHOSULFATE (ADXa)
1b: ADENOSINE-5'-PHOSPHOSULFATE (ADXb)
1c: ADENOSINE-5'-PHOSPHOSULFATE (ADXc)
1d: ADENOSINE-5'-PHOSPHOSULFATE (ADXd)
1e: ADENOSINE-5'-PHOSPHOSULFATE (ADXe)
1f: ADENOSINE-5'-PHOSPHOSULFATE (ADXf)
1g: ADENOSINE-5'-PHOSPHOSULFATE (ADXg)
1h: ADENOSINE-5'-PHOSPHOSULFATE (ADXh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADX
8
Ligand/Ion
ADENOSINE-5'-PHOSPHOSULFATE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:245 , GLN A:246 , LEU A:247 , ARG A:248 , ASN A:249 , HIS A:255 , LEU A:258 , MET A:322 , VAL A:347 , GLY A:348 , ARG A:349 , PRO A:351 , ALA A:352 , ARG A:388 , VAL A:389 , ALA A:390 , HOH A:1027
BINDING SITE FOR RESIDUE ADX A 900
2
AC2
SOFTWARE
PHE B:245 , GLN B:246 , LEU B:247 , ARG B:248 , ASN B:249 , HIS B:255 , LEU B:258 , MET B:322 , VAL B:347 , GLY B:348 , ARG B:349 , PRO B:351 , ALA B:352 , ARG B:388 , VAL B:389 , ALA B:390 , HOH B:1004 , HOH B:1008 , HOH B:1109
BINDING SITE FOR RESIDUE ADX B 900
3
AC3
SOFTWARE
PHE C:245 , GLN C:246 , LEU C:247 , ARG C:248 , ASN C:249 , HIS C:255 , LEU C:258 , MET C:322 , GLY C:348 , ARG C:349 , PRO C:351 , ALA C:352 , ARG C:388 , VAL C:389 , ALA C:390 , HOH C:1014 , HOH C:1021 , HOH C:1064 , HOH C:1134
BINDING SITE FOR RESIDUE ADX C 900
4
AC4
SOFTWARE
PHE D:245 , GLN D:246 , LEU D:247 , ARG D:248 , ASN D:249 , HIS D:255 , LEU D:258 , MET D:322 , VAL D:347 , GLY D:348 , ARG D:349 , PRO D:351 , ALA D:352 , ARG D:388 , VAL D:389 , ALA D:390 , HOH D:1019 , HOH D:1032 , HOH D:1066 , HOH D:1084
BINDING SITE FOR RESIDUE ADX D 900
5
AC5
SOFTWARE
PHE E:245 , GLN E:246 , LEU E:247 , ARG E:248 , ASN E:249 , HIS E:255 , LEU E:258 , MET E:322 , GLY E:348 , ARG E:349 , PRO E:351 , ALA E:352 , ARG E:388 , VAL E:389 , ALA E:390 , HOH E:1095 , HOH E:1106
BINDING SITE FOR RESIDUE ADX E 900
6
AC6
SOFTWARE
PHE F:245 , GLN F:246 , LEU F:247 , ARG F:248 , ASN F:249 , HIS F:255 , LEU F:258 , MET F:322 , GLY F:348 , ARG F:349 , PRO F:351 , ALA F:352 , ARG F:388 , VAL F:389 , ALA F:390 , HOH F:1036
BINDING SITE FOR RESIDUE ADX F 900
7
AC7
SOFTWARE
PHE G:245 , GLN G:246 , LEU G:247 , ARG G:248 , ASN G:249 , HIS G:255 , LEU G:258 , MET G:322 , GLY G:348 , ARG G:349 , PRO G:351 , ALA G:352 , ARG G:388 , VAL G:389 , ALA G:390 , HOH G:1018
BINDING SITE FOR RESIDUE ADX G 900
8
AC8
SOFTWARE
PHE H:245 , GLN H:246 , LEU H:247 , ARG H:248 , ASN H:249 , HIS H:255 , LEU H:258 , MET H:322 , VAL H:347 , GLY H:348 , ARG H:349 , PRO H:351 , ALA H:352 , ARG H:388 , VAL H:389 , ALA H:390
BINDING SITE FOR RESIDUE ADX H 900
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d4mafa1 (A:48-218)
1b: SCOP_d4mafb1 (B:48-218)
1c: SCOP_d4mafc1 (C:48-218)
1d: SCOP_d4mafd1 (D:48-218)
1e: SCOP_d4mafe1 (E:48-218)
1f: SCOP_d4maff1 (F:48-218)
1g: SCOP_d4mafg1 (G:48-218)
1h: SCOP_d4mafh1 (H:49-218)
2a: SCOP_d4mafa2 (A:219-449)
2b: SCOP_d4mafb2 (B:219-451)
2c: SCOP_d4mafc2 (C:219-450)
2d: SCOP_d4mafd2 (D:219-448)
2e: SCOP_d4mafe2 (E:219-450)
2f: SCOP_d4maff2 (F:219-448)
2g: SCOP_d4mafg2 (G:219-451)
2h: SCOP_d4mafh2 (H:219-445)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
automated matches
(9)
Protein domain
:
automated matches
(9)
Soybean (Glycine max) [TaxId: 3847]
(1)
1a
d4mafa1
A:48-218
1b
d4mafb1
B:48-218
1c
d4mafc1
C:48-218
1d
d4mafd1
D:48-218
1e
d4mafe1
E:48-218
1f
d4maff1
F:48-218
1g
d4mafg1
G:48-218
1h
d4mafh1
H:49-218
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Soybean (Glycine max) [TaxId: 3847]
(1)
2a
d4mafa2
A:219-449
2b
d4mafb2
B:219-451
2c
d4mafc2
C:219-450
2d
d4mafd2
D:219-448
2e
d4mafe2
E:219-450
2f
d4maff2
F:219-448
2g
d4mafg2
G:219-451
2h
d4mafh2
H:219-445
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CATH Domains
(0, 0)
Info
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Pfam Domains
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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set fontsize 20
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Show PDB file:
Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (277 KB)
Header - Biol.Unit 1
Biol.Unit 2 (280 KB)
Header - Biol.Unit 2
Biol.Unit 3 (283 KB)
Header - Biol.Unit 3
Biol.Unit 4 (280 KB)
Header - Biol.Unit 4
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