4M71 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

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Title :   MUTANT STRUCTURE OF METHYLTRANSFERASE FROM STREPTOMYCES HYGROSCOPICUS COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE AND METHYLPHENYLPYRUVIC ACID

Authors :   Y. C. Liu, X. W. Zou, H. C. Chan, C. J. Huang, T. L. Li

Date :   12 Aug 13 (Deposition) - 25 Jun 14 (Release) - 25 Jun 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.21

Chains :   Asym./Biol. Unit : A,B

Keywords :   Rossmann Fold, Methyltransferase, Sam/Ppy Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. W. Zou, Y. C. Liu, N. S. Hsu, C. J. Huang, S. Y. Lyu, H. C. Chan, C. Y. Chang, H. W. Yeh, K. H. Lin, C. J. Wu, M. D. Tsai, T. L. Li
Structure And Mechanism Of A Nonhaem-Iron Sam-Dependent C-Methyltransferase And Its Engineering To A Hydratase And An O-Methyltransferase
Acta Crystallogr. , Sect. D V. 70 1549 2014
PubMed-ID: 24914966 | Reference-DOI: 10.1107/S1399004714005239

Molecule 1 - METHYLTRANSFERASE MPPJ
	Chains	:	A, B
	EC Number	:	2.1.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	MPPJ
	Mutation	:	YES
	Organism Scientific	:	STREPTOMYCES HYGROSCOPICUS
	Organism Taxid	:	1912

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (6, 23)

No.	Name	Count	Type	Full Name
1	56D	2	Ligand/Ion	(3R)-2-OXO-3-PHENYLBUTANOIC ACID
2	CA	14	Ligand/Ion	CALCIUM ION
3	FE	2	Ligand/Ion	FE (III) ION
4	HF2	2	Ligand/Ion	(2R)-2-HYDROXY-3-PHENYLPROPANOIC ACID
5	IOD	1	Ligand/Ion	IODIDE ION
6	SAH	2	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:166 , GLY A:168 , ARG A:172 , ASP A:189 , ILE A:190 , ALA A:191 , GLY A:216 , ASP A:217 , ALA A:218 , ARG A:219 , PHE A:239 , MET A:240 , HOH A:512 , HOH A:517 , HOH A:520 , HOH A:590 , HOH A:620 , HOH A:682	BINDING SITE FOR RESIDUE SAH A 401
02	AC2	SOFTWARE	TRP A:99 , CYS A:136 , MET A:240 , HIS A:243 , ASP A:272 , PHE A:287 , PHE A:291 , HIS A:295 , FE A:403 , HOH A:537 , HOH A:564	BINDING SITE FOR RESIDUE 56D A 402
03	AC3	SOFTWARE	HIS A:243 , HIS A:295 , 56D A:402 , HOH A:537 , HOH A:564 , HOH A:738	BINDING SITE FOR RESIDUE FE A 403
04	AC4	SOFTWARE	ASP A:309 , PHE A:312 , CYS A:319 , LYS A:322 , PHE A:334 , HOH A:551 , HOH A:762 , LEU B:305 , LYS B:322 , ALA B:324 , HF2 B:404	BINDING SITE FOR RESIDUE HF2 A 404
05	AC5	SOFTWARE	ARG A:12	BINDING SITE FOR RESIDUE CA A 405
06	AC6	SOFTWARE	LYS A:44	BINDING SITE FOR RESIDUE CA A 406
07	AC7	SOFTWARE	ARG A:75 , HOH A:758 , HOH A:782	BINDING SITE FOR RESIDUE CA A 407
08	AC8	SOFTWARE	ARG A:110	BINDING SITE FOR RESIDUE CA A 408
09	AC9	SOFTWARE	GLY A:182 , HOH A:754	BINDING SITE FOR RESIDUE CA A 409
10	BC1	SOFTWARE	GLY A:228 , PHE A:230 , HOH A:809	BINDING SITE FOR RESIDUE CA A 410
11	BC2	SOFTWARE	VAL A:265	BINDING SITE FOR RESIDUE CA A 411
12	BC3	SOFTWARE	ASP A:306 , ASP A:309 , HOH A:676 , ASP B:306 , ASP B:309 , HOH B:658	BINDING SITE FOR RESIDUE CA A 412
13	BC4	SOFTWARE	GLN A:113	BINDING SITE FOR RESIDUE CA A 413
14	BC5	SOFTWARE	ASP A:217 , THR A:220	BINDING SITE FOR RESIDUE IOD A 414
15	BC6	SOFTWARE	SER B:140 , GLY B:166 , GLY B:168 , ARG B:172 , ASP B:189 , ILE B:190 , GLY B:216 , ASP B:217 , ALA B:218 , ARG B:219 , PHE B:239 , MET B:240 , MET B:241 , GLU B:244 , HOH B:507 , HOH B:516 , HOH B:573	BINDING SITE FOR RESIDUE SAH B 401
16	BC7	SOFTWARE	TRP B:99 , CYS B:136 , MET B:240 , HIS B:243 , ASP B:272 , PHE B:287 , HIS B:295 , FE B:403 , HOH B:598	BINDING SITE FOR RESIDUE 56D B 402
17	BC8	SOFTWARE	HIS B:243 , HIS B:295 , 56D B:402 , HOH B:598 , HOH B:620	BINDING SITE FOR RESIDUE FE B 403
18	BC9	SOFTWARE	LYS A:322 , ALA A:324 , HF2 A:404 , HOH A:676 , ASP B:309 , PHE B:312 , CYS B:319 , VAL B:320 , LYS B:321 , LYS B:322 , HOH B:570	BINDING SITE FOR RESIDUE HF2 B 404
19	CC1	SOFTWARE	ARG B:12	BINDING SITE FOR RESIDUE CA B 406
20	CC2	SOFTWARE	GLN B:113	BINDING SITE FOR RESIDUE CA B 407
21	CC3	SOFTWARE	LYS B:44	BINDING SITE FOR RESIDUE CA B 408
22	CC4	SOFTWARE	ASP B:217	BINDING SITE FOR RESIDUE CA B 409

(no "SS Bond" information available for 4M71)

Asymmetric/Biological Unit

No.	Residues
1	Trp A:246	-	Pro A:247
2	Trp B:246	-	Pro B:247

(no "SAP(SNP)/Variant" information available for 4M71)

(no "PROSITE Motif" information available for 4M71)

(no "Exon" information available for 4M71)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeehhhhhhhh..hhhhhhhhhhhhhh...eeee..eeee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh....eeeee.hhhhhhhh...hhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhh..hhhhhhhhhhhhh....hhhhhhhhh.....eeeeeee.....eeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m71 A   5 VSEAQARRAVADIFNSTLASSAIGAAWELGALDELRENGKLDVSDFAVRHDLHEPAVVGMFTALASVGIVRREGATVVVGPYFDEANHHRSLFHWLNQGSGELFRRMPQVLPNENRTGKFYQLDAGAISYACREISERYFDPAFWAAVDGLGYTPTTVADLGSGSGERLIQIARRFPGVRGLGVDIADGAIAMAEKEVAAKGFGDQISFVRGDARTIDQVSARGEFAEVDLLTCFMMGHEFWPRENCVQTLRKLRAAFPNVRRFLLGDATRTVGIPDRELPVFTLGFEFGHDMMGVYLPTLDEWDGVFEEGGWRCVKKHAIDSLSVSVVFELE 337
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334

Chain B from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeehhhhhhhhh.hhhhhhhhhhhhhh...eeee..eeee..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh.....eeeee.hhhhhhhh.hhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....hhhhh..hhhhhhhhhhhhh....hhhhhhh.......eeeeeee.....eeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m71 B   6 SEAQARRAVADIFNSTLASSAIGAAWELGALDELRENGKLDVSDFAVRHDLHEPAVVGMFTALASVGIVRREGATVVVGPYFDEANHHRSLFHWLNQGSGELFRRMPQVLPNENRTGKFYQLDAGAISYACREISERYFDPAFWAAVDGLGYTPTTVADLGSGSGERLIQIARRFPGVRGLGVDIADGAIAMAEKEVAAKGFGDQISFVRGDARTIDQVSARGEFAEVDLLTCFMMGHEFWPRENCVQTLRKLRAAFPNVRRFLLGDATRTVGIPDRELPVFTLGFEFGHDMMGVYLPTLDEWDGVFEEGGWRCVKKHAIDSLSVSVVFELE 337
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4M71)

(no "CATH Domain" information available for 4M71)

(no "Pfam Domain" information available for 4M71)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
		56D	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Trp A:246 - Pro A:247	[ RasMol ]
		Trp B:246 - Pro B:247	[ RasMol ]

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	4m71
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	2.1.1.-
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	MPPJ_STRHY \| Q643C8	:	4kib 4kic 4kif 4kig 4m6x 4m6y 4m72 4m73 4m74

4kib	WILD TYPE PROTEIN
4kic
4kif
4kig
4m6x
4m6y
4m72
4m73
4m74

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 23)

Sites (22, 22)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (4, 4)

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