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4M71
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (120 KB)
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(1)
Title
:
MUTANT STRUCTURE OF METHYLTRANSFERASE FROM STREPTOMYCES HYGROSCOPICUS COMPLEXED WITH S-ADENOSYL-L-HOMOCYSTEINE AND METHYLPHENYLPYRUVIC ACID
Authors
:
Y. C. Liu, X. W. Zou, H. C. Chan, C. J. Huang, T. L. Li
Date
:
12 Aug 13 (Deposition) - 25 Jun 14 (Release) - 25 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.21
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Rossmann Fold, Methyltransferase, Sam/Ppy Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. W. Zou, Y. C. Liu, N. S. Hsu, C. J. Huang, S. Y. Lyu, H. C. Chan, C. Y. Chang, H. W. Yeh, K. H. Lin, C. J. Wu, M. D. Tsai, T. L. Li
Structure And Mechanism Of A Nonhaem-Iron Sam-Dependent C-Methyltransferase And Its Engineering To A Hydratase And An O-Methyltransferase
Acta Crystallogr. , Sect. D V. 70 1549 2014
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Hetero Components
(6, 23)
Info
All Hetero Components
1a: (3R)-2-OXO-3-PHENYLBUTANOIC ACID (56Da)
1b: (3R)-2-OXO-3-PHENYLBUTANOIC ACID (56Db)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
4a: (2R)-2-HYDROXY-3-PHENYLPROPANOIC A... (HF2a)
4b: (2R)-2-HYDROXY-3-PHENYLPROPANOIC A... (HF2b)
5a: IODIDE ION (IODa)
6a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
6b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
56D
2
Ligand/Ion
(3R)-2-OXO-3-PHENYLBUTANOIC ACID
2
CA
14
Ligand/Ion
CALCIUM ION
3
FE
2
Ligand/Ion
FE (III) ION
4
HF2
2
Ligand/Ion
(2R)-2-HYDROXY-3-PHENYLPROPANOIC ACID
5
IOD
1
Ligand/Ion
IODIDE ION
6
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:166 , GLY A:168 , ARG A:172 , ASP A:189 , ILE A:190 , ALA A:191 , GLY A:216 , ASP A:217 , ALA A:218 , ARG A:219 , PHE A:239 , MET A:240 , HOH A:512 , HOH A:517 , HOH A:520 , HOH A:590 , HOH A:620 , HOH A:682
BINDING SITE FOR RESIDUE SAH A 401
02
AC2
SOFTWARE
TRP A:99 , CYS A:136 , MET A:240 , HIS A:243 , ASP A:272 , PHE A:287 , PHE A:291 , HIS A:295 , FE A:403 , HOH A:537 , HOH A:564
BINDING SITE FOR RESIDUE 56D A 402
03
AC3
SOFTWARE
HIS A:243 , HIS A:295 , 56D A:402 , HOH A:537 , HOH A:564 , HOH A:738
BINDING SITE FOR RESIDUE FE A 403
04
AC4
SOFTWARE
ASP A:309 , PHE A:312 , CYS A:319 , LYS A:322 , PHE A:334 , HOH A:551 , HOH A:762 , LEU B:305 , LYS B:322 , ALA B:324 , HF2 B:404
BINDING SITE FOR RESIDUE HF2 A 404
05
AC5
SOFTWARE
ARG A:12
BINDING SITE FOR RESIDUE CA A 405
06
AC6
SOFTWARE
LYS A:44
BINDING SITE FOR RESIDUE CA A 406
07
AC7
SOFTWARE
ARG A:75 , HOH A:758 , HOH A:782
BINDING SITE FOR RESIDUE CA A 407
08
AC8
SOFTWARE
ARG A:110
BINDING SITE FOR RESIDUE CA A 408
09
AC9
SOFTWARE
GLY A:182 , HOH A:754
BINDING SITE FOR RESIDUE CA A 409
10
BC1
SOFTWARE
GLY A:228 , PHE A:230 , HOH A:809
BINDING SITE FOR RESIDUE CA A 410
11
BC2
SOFTWARE
VAL A:265
BINDING SITE FOR RESIDUE CA A 411
12
BC3
SOFTWARE
ASP A:306 , ASP A:309 , HOH A:676 , ASP B:306 , ASP B:309 , HOH B:658
BINDING SITE FOR RESIDUE CA A 412
13
BC4
SOFTWARE
GLN A:113
BINDING SITE FOR RESIDUE CA A 413
14
BC5
SOFTWARE
ASP A:217 , THR A:220
BINDING SITE FOR RESIDUE IOD A 414
15
BC6
SOFTWARE
SER B:140 , GLY B:166 , GLY B:168 , ARG B:172 , ASP B:189 , ILE B:190 , GLY B:216 , ASP B:217 , ALA B:218 , ARG B:219 , PHE B:239 , MET B:240 , MET B:241 , GLU B:244 , HOH B:507 , HOH B:516 , HOH B:573
BINDING SITE FOR RESIDUE SAH B 401
16
BC7
SOFTWARE
TRP B:99 , CYS B:136 , MET B:240 , HIS B:243 , ASP B:272 , PHE B:287 , HIS B:295 , FE B:403 , HOH B:598
BINDING SITE FOR RESIDUE 56D B 402
17
BC8
SOFTWARE
HIS B:243 , HIS B:295 , 56D B:402 , HOH B:598 , HOH B:620
BINDING SITE FOR RESIDUE FE B 403
18
BC9
SOFTWARE
LYS A:322 , ALA A:324 , HF2 A:404 , HOH A:676 , ASP B:309 , PHE B:312 , CYS B:319 , VAL B:320 , LYS B:321 , LYS B:322 , HOH B:570
BINDING SITE FOR RESIDUE HF2 B 404
19
CC1
SOFTWARE
ARG B:12
BINDING SITE FOR RESIDUE CA B 406
20
CC2
SOFTWARE
GLN B:113
BINDING SITE FOR RESIDUE CA B 407
21
CC3
SOFTWARE
LYS B:44
BINDING SITE FOR RESIDUE CA B 408
22
CC4
SOFTWARE
ASP B:217
BINDING SITE FOR RESIDUE CA B 409
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (126 KB)
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