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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  TRAF DOMAIN OF HUMAN TRAF4
 
Authors :  F. Niu, H. Ru, W. Ding, S. Ouyang, Z. J. Liu
Date :  07 Aug 13  (Deposition) - 11 Sep 13  (Release) - 11 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Traf4, Traf Domain, Adaptor Protein, Regular Protein, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Niu, H. Ru, W. Ding, S. Ouyang, Z. J. Liu
Structural Biology Study Of Human Tnf Receptor Associated Factor 4 Traf Domain
Protein Cell V. 4 687 2013
PubMed-ID: 23982741  |  Reference-DOI: 10.1007/S13238-013-3068-Z

(-) Compounds

Molecule 1 - TNF RECEPTOR-ASSOCIATED FACTOR 4
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TRAF4, CART1, MLN62, RNF83
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CYSTEINE-RICH DOMAIN ASSOCIATED WITH RING AND TRAF DOMAINS PROTEIN 1, METASTATIC LYMPH NODE GENE 62 PROTEIN, MLN 62, RING FINGER PROTEIN 83

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4M4E)

(-) Sites  (0, 0)

(no "Site" information available for 4M4E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M4E)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Trp A:380 -Pro A:381
2Trp B:380 -Pro B:381
3Pro C:328 -Asn C:329
4Trp C:380 -Pro C:381

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M4E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M4E)

(-) Exons   (0, 0)

(no "Exon" information available for 4M4E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains d4m4ea_ A: automated matches                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeehhhhhhhhhhh.....ee...ee......eeeeeee...hhhhh..eeeeeeeee...hhhhh.......eeeee.............eeeee................eeeeeeeehhhhh........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4e A 298 ELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELP 465
                                   307       317       327       337       347       357       367       377       387       397       407       417    || 436       446       456         
                                                                                                                                                      422|                                 
                                                                                                                                                       432                                 


Chain B from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains d4m4eb_ B: automated matches                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.....eeeeeeehhhhhhhhhhhh....ee...ee......eeeeeee...hhhhh..eeeeeeee....hhhhh.......eeeee...........eeeee.....hhhhh.......hhhhhhh.eeeeeeeehhhhh........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4e B 298 ELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELP 465
                                   307       317       327       337       347       357       367       377       387       397|      409       419       429       439       449       459      
                                                                                                                             397|                                                                 
                                                                                                                              400                                                                 


Chain C from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains d4m4ec_ C: automated matches                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.......eeeeeeehhhhhhhhhhhh...eee...ee......eeeeeee...hhhhh..eeeeeeeee...hhhhh.......eeeee...........eeeee.....hhhhh......eeeeeeeehhhhh........eeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m4e C 292 LQELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGKPQHVTETFHPDPNWKNFQKPGTLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRLEHHHH 472
                                   301       311       321       331       341       351       361       371       381       391     ||403       413       432       442       452       462       472
                                                                                                                                   397|                   422|                                        
                                                                                                                                    400                    432
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M4E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M4E)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 4m4e)
 
  Cis Peptide Bonds
    Pro C:328 - Asn C:329   [ RasMol ]  
    Trp A:380 - Pro A:381   [ RasMol ]  
    Trp B:380 - Pro B:381   [ RasMol ]  
    Trp C:380 - Pro C:381   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRAF4_HUMAN | Q9BUZ4: 2eod 2yuc 3zjb 4k8u

(-) Related Entries Specified in the PDB File

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