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(-) Description

Title :  CRYSTAL STRUCTURE OF TRAF4 TRAF DOMAIN
 
Authors :  H. H. Park, J. H. Yoon
Date :  18 Apr 13  (Deposition) - 15 Jan 14  (Release) - 22 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Traf Domain, Traf Fold, Protein Interaction, Signaling Molecule Binding, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Yoon, Y. -J. Cho, H. H. Park
Structure Of The Traf4 Traf Domain With A Coiled-Coil Domai And Its Implications For The Traf4 Signalling Pathway
Acta Crystallogr. , Sect. D V. 70 2 2014
PubMed: search  |  Reference-DOI: 10.1107/S139900471302333X

(-) Compounds

Molecule 1 - TNF RECEPTOR-ASSOCIATED FACTOR 4
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 281-470
    Gene: TRAF4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CYSTEINE-RICH DOMAIN ASSOCIATED WITH RING AND TRAF DOMAINS PROTEIN 1, METASTATIC LYMPH NODE GENE 62 PROTEIN, MLN 62, RING FINGER PROTEIN 83

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4K8U)

(-) Sites  (0, 0)

(no "Site" information available for 4K8U)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K8U)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric/Biological Unit
No.Residues
1Leu A:292 -Gln A:293
2Glu A:294 -Leu A:295
3Trp A:380 -Pro A:381
4Trp A:423 -Arg A:424
5Gly A:425 -Ser A:426
6Asp B:307 -Gly B:308
7Trp B:380 -Pro B:381
8Gly B:421 -Thr B:422
9Asp B:428 -Glu B:429
10Glu C:300 -Glu C:301
11Pro C:328 -Asn C:329
12Trp C:380 -Pro C:381
13Gly C:425 -Ser C:426
14Asp C:428 -Glu C:429
15Ser C:431 -Leu C:432

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K8U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K8U)

(-) Exons   (0, 0)

(no "Exon" information available for 4K8U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains d4k8ua_ A: automated matches                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.......eeeeee.hhhhhhhhhhhh....ee...ee......eeeeeee...hhhhh..eeeeeeeee...hhhhh.......eeeee.............eeeee.....hhhhh...............eeeeeeeehhhhh.........eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k8u A 291 ELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKI 468
                                   300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460        


Chain B from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains d4k8ub_ B: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeeehhhhhhhhhhhh....ee...ee......eeeeeee...hhhhh..eeeeeeeee...hhhhh.......eeeee.............eeeee.....hhhhh...............eeeeeeee.hhhhh.......eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k8u B 293 QELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKI 468
                                   302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462      


Chain C from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains d4k8uc_ C: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee.hhhhhhhh........ee...ee......eeeeeee...hhhhh..eeeeeeeee...hhhhh.......eeeee.............eeeee.....hhhhh...............eeeeeeee.....hhhhh....eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k8u C 295 LRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKILS 470
                                   304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K8U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K8U)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 4k8u)
 
  Cis Peptide Bonds
    Asp B:307 - Gly B:308   [ RasMol ]  
    Asp B:428 - Glu B:429   [ RasMol ]  
    Asp C:428 - Glu C:429   [ RasMol ]  
    Glu A:294 - Leu A:295   [ RasMol ]  
    Glu C:300 - Glu C:301   [ RasMol ]  
    Gly A:425 - Ser A:426   [ RasMol ]  
    Gly B:421 - Thr B:422   [ RasMol ]  
    Gly C:425 - Ser C:426   [ RasMol ]  
    Leu A:292 - Gln A:293   [ RasMol ]  
    Pro C:328 - Asn C:329   [ RasMol ]  
    Ser C:431 - Leu C:432   [ RasMol ]  
    Trp A:380 - Pro A:381   [ RasMol ]  
    Trp A:423 - Arg A:424   [ RasMol ]  
    Trp B:380 - Pro B:381   [ RasMol ]  
    Trp C:380 - Pro C:381   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRAF4_HUMAN | Q9BUZ4: 2eod 2yuc 3zjb 4m4e

(-) Related Entries Specified in the PDB File

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