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(-) Description

Title :  CRYSTAL STRUCTURE OF THE S105A MUTANT OF A C-C HYDROLASE, DXNB2 FROM SPHINGOMONAS WITTICHII RW1
 
Authors :  S. Ghosh, J. T. Bolin, S. Bhowmik
Date :  31 Jul 13  (Deposition) - 18 Sep 13  (Release) - 18 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Meta-Cleavage Product Hydrolase, C-C Bond Hydrolase, Alpha-Beta Hydrolase, Dibenzo-P-Dioxin Degradation, Dibenzofuran Degradation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. C. Ruzzini, S. Bhowmik, K. C. Yam, S. Ghosh, J. T. Bolin, L. D. Eltis
The Lid Domain Of The Mcp Hydrolase Dxnb2 Contributes To Th Reactivity Toward Recalcitrant Pcb Metabolites.
Biochemistry V. 52 5685 2013
PubMed-ID: 23879719  |  Reference-DOI: 10.1021/BI400774M

(-) Compounds

Molecule 1 - MCP HYDROLASE
    Chains: A
    EC Number: 3.7.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEMDXN1
    Expression System Strain: DH5A
    Expression System Taxid: 668369
    Expression System Vector Type: PLASMID
    Gene: DXNB2, SWIT_3055
    Mutation: YES
    Organism Scientific: SPHINGOMONAS WITTICHII
    Organism Taxid: 392499
    Strain: RW1
    Synonym: ALPHA/BETA HYDROLASE FOLD

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LYD)

(-) Sites  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

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   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains d4lyda_ A: automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..eeeeeeee....eeeee.......hhhhhhh.hhhhhhh..eeeee..................hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee....eehhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee.hhhhhhh....eeeeee......hhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lyd A   1 MFEQFESKFIDCDGIRTHYIEMGEGDPLVLVHGGGAGADGRSNFADNFPIFARHMRVIAYDMVGFGQTDAPDPAGFAYTQAARTDHLISFIKALGLSKICLIGNAMGGTTACGAALKAPELIDRLVLMGAAVNISPDDMVANRYDGSEEGMRKIIAALTHSYQPTDDIVHYRHEASLRPTTTAAYKATMGWAKQNGLYYSPEQLASLTMPVLVLGGKNDVMVPVRKVIDQILAIPQAIGHVFPNCGHWVMIEYPEEFCTQTLHFFGKL 276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140  ||   158       168       178       188       198       208       218       228       238       248       258       268        
                                                                                                                                                                        143|                                                                                                                            
                                                                                                                                                                         152
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LYD)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A5VAT9_SPHWW | A5VAT9: 4lxg 4lxh 4lxi 4lye

(-) Related Entries Specified in the PDB File

4lxg DXNB2 WILD TYPE
4lxh DXNB2 S105A IN COMPLEX WITH 3-CL-HOPDA
4lxi DXNB2 S105A IN COMPLEX WITH 5,8-DIF-HOPDA