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(-) Description

Title :  CRYSTAL STRUCTURE OF DXNB2, A CARBON - CARBON BOND HYDROLASE FROM SPHINGOMONAS WITTICHII RW1
 
Authors :  S. Bhowmik, J. T. Bolin
Date :  29 Jul 13  (Deposition) - 18 Sep 13  (Release) - 18 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.22
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Carbon-Carbon Bond Hydrolase, Rossmann Fold, Alpha/Beta Hydrolase Fold, Cytosolic, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. C. Ruzzini, S. Bhowmik, K. C. Yam, S. Ghosh, J. T. Bolin, L. D. Eltis
The Lid Domain Of The Mcp Hydrolase Dxnb2 Contributes To Th Reactivity Toward Recalcitrant Pcb Metabolites.
Biochemistry V. 52 5685 2013
PubMed-ID: 23879719  |  Reference-DOI: 10.1021/BI400774M

(-) Compounds

Molecule 1 - MCP HYDROLASE
    Chains: A
    EC Number: 3.7.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DXNB2, SWIT_3055
    Organism Scientific: SPHINGOMONAS WITTICHII RW1
    Organism Taxid: 392499
    Strain: RW1
    Synonym: ALPHA/BETA HYDROLASE FOLD

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:33 , GLY A:34 , GLY A:35 , ASN A:104 , SER A:105 , LEU A:166 , MET A:229 , HIS A:255 , TRP A:256 , HOH A:634 , HOH A:637 , HOH A:675BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWARETYR A:261 , PRO A:262 , GLU A:263 , GLU A:264 , HOH A:632BINDING SITE FOR RESIDUE SO4 A 502
3AC3SOFTWARESER A:155 , GLU A:156 , HIS A:181 , HOH A:681BINDING SITE FOR RESIDUE SO4 A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LXG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LXG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LXG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LXG)

(-) Exons   (0, 0)

(no "Exon" information available for 4LXG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4lxga_ A: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..eeeeeeee....eeeee.......hhhhhhh.hhhhhhh..eeeee..................hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee....eehhhhhh...hhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhee.hhhhhhh....eeeeee......hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lxg A   1 MFEQFESKFIDCDGIRTHYIEMGEGDPLVLVHGGGAGADGRSNFADNFPIFARHMRVIAYDMVGFGQTDAPDPAGFAYTQAARTDHLISFIKALGLSKICLIGNSMGGTTACGAALKAPELIDRLVLMGAAVNISPDDMVADDLAAVMSYDGSEEGMRKIIAALTHSYQPTDDIVHYRHEASLRPTTTAAYKATMGWAKQNGLYYSPEQLASLTMPVLVLGGKNDVMVPVRKVIDQILAIPQAIGHVFPNCGHWVMIEYPEEFCTQTLHFFGKL 276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140||     152       162       172       182       192       202       212       222       232       242       252       262       272    
                                                                                                                                                                      141|                                                                                                                                    
                                                                                                                                                                       144
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LXG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LXG)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A5VAT9_SPHWW | A5VAT9: 4lxh 4lxi 4lyd 4lye

(-) Related Entries Specified in the PDB File

4lxh 4lxi 4lyd