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(-) Description

Title :  THE 1.6A CRYSTAL STRUCTURE OF HUMANIZED XENOPUS MDM2 WITH RO5027344
 
Authors :  B. J. Graves, C. Lukacs, U. Kammlott
Date :  28 Jul 13  (Deposition) - 16 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Mdm2, Indolinone, E3 Ubiquitin Ligase, P53, Nucleus, Ligase-Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Zhang, Q. Ding, J. J. Liu, J. Zhang, N. Jiang, X. J. Chu, D. Bartkovitz K. C. Luk, C. Janson, C. Tovar, Z. M. Filipovic, B. Higgins, K. Glenn, K. Packman, L. T. Vassilev, B. Graves
Discovery Of Potent And Selective Spiroindolinone Mdm2 Inhibitor, Ro8994, For Cancer Therapy.
Bioorg. Med. Chem. V. 22 4001 2014
PubMed-ID: 24997575  |  Reference-DOI: 10.1016/J.BMC.2014.05.072

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE MDM2
    ChainsA
    EC Number6.3.2.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPUBS 520
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentN-TERMINAL DOMAIN (UNP RESIDUES 21-105)
    GeneMDM2
    MutationYES
    Organism CommonCLAWED FROG,COMMON PLATANNA,PLATANNA
    Organism ScientificXENOPUS LAEVIS
    Organism Taxid8355
    SynonymDOUBLE MINUTE 2 PROTEIN, XDM2, P53-BINDING PROTEIN MDM2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
120Q1Ligand/Ion(3S)-3-[(3R)-1-ACETYLPIPERIDIN-3-YL]-6-CHLORO-3-(3-CHLOROBENZYL)-1,3-DIHYDRO-2H-INDOL-2-ONE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:50 , ILE A:57 , TYR A:63 , GLU A:86 , VAL A:89 , HIS A:92 , HOH A:302 , HOH A:344 , HOH A:360BINDING SITE FOR RESIDUE 20Q A 201
2AC2SOFTWAREASN A:75 , GLU A:91 , HIS A:92 , ARG A:93 , ARG A:94 , HOH A:356 , HOH A:364 , HOH A:365BINDING SITE FOR RESIDUE SO4 A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LWT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LWT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LWT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LWT)

(-) Exons   (0, 0)

(no "Exon" information available for 4LWT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:86
                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhh.......hhhhhhhhhhhhhhhh.........eee....hhhhhhh..eee..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 4lwt A  20 MEKLVQPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEHRRIYAMISRNLVS 105
                                    29        39        49        59        69        79        89        99      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LWT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LWT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LWT)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MDM2_XENLA | P562731ttv 1ycq 4ipf 4j3e 4j74 4j7d 4j7e 4jrg 4jsc 4lwu 4lwv

(-) Related Entries Specified in the PDB File

4lwu 4lwv