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(-) Description

Title :  THE 1.14A CRYSTAL STRUCTURE OF HUMANIZED XENOPUS MDM2 WITH RO5499252
 
Authors :  B. J. Graves, C. Lukacs, C. A. Janson
Date :  28 Jul 13  (Deposition) - 16 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.14
Chains :  Asym./Biol. Unit :  A
Keywords :  Mdm2, Spiroindolinone, E3 Ubiquitin Ligase, P53, Nucleus, Ligase- Ligase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Zhang, Q. Ding, J. J. Liu, J. Zhang, N. Jiang, X. J. Chu, D. Bartkovitz K. C. Luk, C. Janson, C. Tovar, Z. M. Filipovic, B. Higgins, K. Glenn, K. Packman, L. T. Vassilev, B. Graves
Discovery Of Potent And Selective Spiroindolinone Mdm2 Inhibitor, Ro8994, For Cancer Therapy.
Bioorg. Med. Chem. V. 22 4001 2014
PubMed-ID: 24997575  |  Reference-DOI: 10.1016/J.BMC.2014.05.072

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE MDM2
    ChainsA
    EC Number6.3.2.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPUBS 520
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentN-TERMINAL DOMAIN (UNP RESIDUES 21-105)
    GeneMDM2
    MutationYES
    Organism CommonCLAWED FROG,COMMON PLATANNA,PLATANNA
    Organism ScientificXENOPUS LAEVIS
    Organism Taxid8355
    SynonymDOUBLE MINUTE 2 PROTEIN, XDM2, P53-BINDING PROTEIN MDM2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
120U1Ligand/Ion(2'S,3R,4'S,5'R)-N-(4-CARBAMOYLPHENYL)-6-CHLORO-4'-(3-CHLORO-2-FLUOROPHENYL)-2'-(2,2-DIMETHYLPROPYL)-2-OXO-1,2-DIHYDROSPIRO[INDOLE-3,3'-PYRROLIDINE]-5'-CARBOXAMIDE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:50 , ILE A:57 , HIS A:69 , PHE A:82 , GLN A:85 , PHE A:87 , VAL A:89 , LYS A:90 , HIS A:92 , ILE A:95 , TYR A:96 , SO4 A:202 , HOH A:316 , HOH A:375 , HOH A:419BINDING SITE FOR RESIDUE 20U A 201
2AC2SOFTWARETYR A:63 , GLU A:65 , LYS A:66 , HIS A:69 , 20U A:201 , HOH A:304 , HOH A:397 , HOH A:400 , HOH A:419BINDING SITE FOR RESIDUE SO4 A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LWU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LWU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LWU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LWU)

(-) Exons   (0, 0)

(no "Exon" information available for 4LWU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:85
                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhh.......hhhhhhhhhhhhhhhh.........eee...hhhhhhhh..eee..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 4lwu A  21 EKLVQPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEHRRIYAMISRNLVS 105
                                    30        40        50        60        70        80        90       100     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LWU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LWU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LWU)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MDM2_XENLA | P562731ttv 1ycq 4ipf 4j3e 4j74 4j7d 4j7e 4jrg 4jsc 4lwt 4lwv

(-) Related Entries Specified in the PDB File

4lwt 4lwv