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(-) Description

Title :  MOBM RELAXASE DOMAIN (MOBV; MOB_PRE) BOUND TO PLASMID PMV158 ORIT DNA (22NT+3'THIOPHOSPHATE). MN-BOUND CRYSTAL STRUCTURE AT PH 6.8
 
Authors :  R. Pluta, D. R. Boer, M. Coll
Date :  26 Jul 13  (Deposition) - 24 Sep 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Protein-Dna Complex, Pfam Family: Mob_pre (Pf01076). Mob Relaxase Family: Mobv, Relaxase/Endonuclease, Orit Dna, Dna Binding Protein- Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Pluta, D. R. Boer, S. Russi, C. Fernandez-Lopez, F. Lorenzo-Diaz, R. Perez-Luque, M. Espinosa, M. Coll
Structures Of Dna-Mobm Relaxase Complexes Reveal A Histidine/Metal Catalysis For Dna Cleavage And Ligation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PLASMID RECOMBINATION ENZYME
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-1
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RELAXASE DOMAIN OF MOBM PROTEIN, UNP RESIDUES 2-199
    Gene: PRE, MOB
    Organism Scientific: STREPTOCOCCUS AGALACTIAE
    Organism Taxid: 1311
    Synonym: MOBILIZATION PROTEIN
 
Molecule 2 - DNA (5'-D(*AP*CP*TP*TP*TP*AP*T)-3')
    Chains: B
    Engineered: YES
    Fragment: OLIGONUCLEOTIDE_1 MIMICKING PMV158 ORIT DNA HAIRPIN
    Other Details: OLIGONUCLEOTIDES WERE OBTAINED FROM BIOMERS (ULM, GERMANY).
    Synthetic: YES
 
Molecule 3 - DNA (5'- D(*AP*TP*AP*AP*AP*GP*TP*AP*TP*AP*GP*TP*GP*TP*GP*(TS6))-3')
    Chains: C
    Engineered: YES
    Fragment: OLIGONUCLEOTIDE_2 MIMICKING PMV158 ORIT DNA HAIRPIN
    Other Details: OLIGONUCLEOTIDES WERE OBTAINED FROM BIOMERS (ULM, GERMANY).
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MN1Ligand/IonMANGANESE (II) ION
3TS61Mod. NucleotideMONOTHIOPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:126 , GLU A:129 , HIS A:133 , HIS A:135 , DG C:26 , TS6 C:101BINDING SITE FOR RESIDUE MN A 201
2AC2SOFTWAREALA A:190BINDING SITE FOR RESIDUE CL A 202
3AC3SOFTWAREASP A:50BINDING SITE FOR RESIDUE CL A 203
4AC4SOFTWAREASN A:70BINDING SITE FOR RESIDUE CL A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LVL)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

(no "Exon" information available for 4LVL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeehhhhhhhhhhhhh...........hhhhhhhhee........hhhhhhhhhhhh..............eeeeeee.hhhhhhh.hhhhhhhhhhhhhhhhhhhhh...eeeeeee......eeeeee..ee..eehhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lvl A   2 SYMVARMQKMKAGNLGGAFKHNERVFETHSNKDINPSRSHLNYELTDRDRSVSYEKQIKDYVNENKVSNRAIRKDAVLCDEWIITSDKDFFEKLDEEQTRTFFETAKNYFAENYGESNIAYASVHLDESTPHMHMGVVPFENGKLSSKAMFDREELKHIQEDLPRYMSDHGFELERGKLNSEAKHKTVAEFKRAMA 197
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191      


Chain B from PDB  Type:DNA  Length:7
                                       
                 4lvl B   1 ACTTTAT   7


Chain C from PDB  Type:DNA  Length:16
                                                
                 4lvl C  12 ATAAAGTATAGTGTGx 101
                                    21    ||
                                         26|
                                         101-TS6
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        PRE_STRAG | P13925: 4lvi 4lvj 4lvk 4lvm 5n2q

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