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(-) Description

Title :  CRYSTAL STRUCTURE OF AN AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3A (ARID3A) FROM HOMO SAPIENS AT 2.21 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Stemcell)
Date :  05 Jul 13  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Arid/Bright Dna Binding Domain, Pf01388 Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg), Partnership For Stem Cell Biology (Stemcell)
Crystal Structure Of An At-Rich Interactive Domain-Containing Protein 3A (Arid3A) From Homo Sapiens At 2. 21 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ARID DOMAIN RESIDUES 216-351
    Gene: ARID3A, BC060828, DRIL1, DRIL3, DRX, E2FBP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ARID DOMAIN-CONTAINING PROTEIN 3A, B-CELL REGULATOR OF IGH TRANSCRIPTION, BRIGHT, DEAD RINGER-LIKE PROTEIN 1, E2F-BINDING PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4LJX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LJX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LJX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LJX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LJX)

(-) Exons   (0, 0)

(no "Exon" information available for 4LJX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains d4ljxa_ A: automated matches                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ljx A 223 WTYEEQFKQLYELDGDPKRKEFLDDLFSFmQKRGTPVNRIPImAKQVLDLFmLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYmEYLYPYECEKRGLSNPNELQAAIDS 344
                                   232       242       252       262  |    272 |     282       292       302       312      |322       332       342  
                                                       252-MSE      265-MSE  274-MSE                                      319-MSE                     


Chain B from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains d4ljxb_ B: automated matches                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ljx B 223 WTYEEQFKQLYELDGDPKRKEFLDDLFSFmQKRGTPVNRIPImAKQVLDLFmLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYmEYLYPYECEKRGLSNPNELQAAIDS 344
                                   232       242       252       262  |    272 |     282       292       302       312      |322       332       342  
                                                       252-MSE      265-MSE  274-MSE                                      319-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LJX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LJX)

(-) Gene Ontology  (18, 18)

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  ARI3A_HUMAN | Q99856
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        ARI3A_HUMAN | Q99856: 2kk0

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