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(-) Description

Title :  CRYSTAL STRUCTURE OF RESTON EBOLA VIRUS VP35 RNA BINDING DOMAIN BOUND TO 12-BP DSRNA
 
Authors :  S. Bale, J-P. Julien, Z. A. Bornholdt, A. S. Krois, I. A. Wilson, E. O. Sap
Date :  27 Jun 13  (Deposition) - 10 Jul 13  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,I,J
Keywords :  Rna Binding Domain, Dsrna Binding Protein, Dsrna, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bale, J. P. Julien, Z. A. Bornholdt, A. S. Krois, I. A. Wilson, E. O. Saphire
Ebolavirus Vp35 Coats The Backbone Of Double-Stranded Rna For Interferon Antagonism.
J. Virol. V. 87 10385 2013
PubMed-ID: 23824825  |  Reference-DOI: 10.1128/JVI.01452-13

(-) Compounds

Molecule 1 - POLYMERASE COFACTOR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 205-329
    Gene: VP35, REBOVGP2
    Organism Common: REBOV
    Organism Scientific: RESTON EBOLAVIRUS
    Organism Taxid: 386032
    Strain: RESTON
 
Molecule 2 - DSRNA
    Chains: E, F, J, I
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LG2)

(-) Sites  (0, 0)

(no "Site" information available for 4LG2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LG2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LG2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LG2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LG2)

(-) Exons   (0, 0)

(no "Exon" information available for 4LG2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhh.ee......hhhh.eeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lg2 A 208 ISAKDLKEIMYDHLPGFGTAFHQLVQVICKIGKDNNLLDTIHAEFQASLADGDSPQCALIQITKRVPIFQDVPPPIIHIRSRGDIPRACQKSLRPAPPSPKIDRGWVCLFKMQDGKTLGLKI 329
                                   217       227       237       247       257       267       277       287       297       307       317       327  


Chain B from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhh.eee.....hhhh.eeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lg2 B 208 ISAKDLKEIMYDHLPGFGTAFHQLVQVICKIGKDNNLLDTIHAEFQASLADGDSPQCALIQITKRVPIFQDVPPPIIHIRSRGDIPRACQKSLRPAPPSPKIDRGWVCLFKMQDGKTLGLKI 329
                                   217       227       237       247       257       267       277       287       297       307       317       327  


Chain C from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhh.ee......hhhh.eeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lg2 C 208 ISAKDLKEIMYDHLPGFGTAFHQLVQVICKIGKDNNLLDTIHAEFQASLADGDSPQCALIQITKRVPIFQDVPPPIIHIRSRGDIPRACQKSLRPAPPSPKIDRGWVCLFKMQDGKTLGLKI 329
                                   217       227       237       247       257       267       277       287       297       307       317       327  


Chain D from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhh.ee......hhhh.eeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lg2 D 208 ISAKDLKEIMYDHLPGFGTAFHQLVQVICKIGKDNNLLDTIHAEFQASLADGDSPQCALIQITKRVPIFQDVPPPIIHIRSRGDIPRACQKSLRPAPPSPKIDRGWVCLFKMQDGKTLGLKI 329
                                   217       227       237       247       257       267       277       287       297       307       317       327  


Chain E from PDB  Type:RNA  Length:9
                                         
                 4lg2 E   1 CUAGACGUC   9


Chain F from PDB  Type:RNA  Length:9
                                         
                 4lg2 F   4 GACGUCUAG  12


Chain I from PDB  Type:RNA  Length:12
                                            
                 4lg2 I   1 CUAGACGUCUAG  12
                                    10  


Chain J from PDB  Type:RNA  Length:12
                                            
                 4lg2 J   1 CUAGACGUCUAG  12
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LG2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LG2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LG2)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Cis Peptide Bonds" information available for 4lg2)
 

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  4lg2
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  VP35_EBORR | Q8JPY0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VP35_EBORR | Q8JPY0: 3ks4 3ks8 3l2a

(-) Related Entries Specified in the PDB File

3fke 3ks8 3l25 3l26 4gha