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(-) Description

Title :  CRYSTAL STRUCTURE OF MARBURG VIRUS VP35 RNA BINDING DOMAIN BOUND TO 12-BP DSRNA
 
Authors :  S. Bale, J. Jean-Philippe, Z. A. Bornholdt, C. K. Kimberlin, P. Halfman M. A. Zandonatti, J. Kunert, G. J. A. Kroon, Y. Kawaoka, I. J. Macrae, I. E. O. Saphire
Date :  07 Aug 12  (Deposition) - 22 Aug 12  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,C,E,G,I,J
Keywords :  Viral Polymerase, Interferon Inhibition, Dsrna, Viral Protein, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bale, J. P. Julien, Z. A. Bornholdt, C. R. Kimberlin, P. Halfmann, M. A. Zandonatti, J. Kunert, G. J. Kroon, Y. Kawaoka, I. J. Macrae, I. A. Wilson, E. O. Saphire
Marburg Virus Vp35 Can Both Fully Coat The Backbone And Cap The Ends Of Dsrna For Interferon Antagonism.
Plos Pathog. V. 8 02916 2012
PubMed-ID: 23028316  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1002916

(-) Compounds

Molecule 1 - POLYMERASE COFACTOR VP35
    Chains: A, C, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET46B
    Expression System Strain: R2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: MARBURG VIRUS VP35 RNA BINDING DOMAIN, UNP RESIDUES 204- 329
    Gene: VP35
    Organism Common: MARV
    Organism Scientific: MARBURG VIRUS - MUSOKE, KENYA, 1980
    Organism Taxid: 33727
    Strain: MUSOKE
 
Molecule 2 - RNA (5'-R(*CP*UP*AP*GP*AP*CP*GP*UP*CP*UP*AP*G)-3')
    Chains: I, J
    Engineered: YES
    Other Details: RNA FROM IDT TECHNOLOGIES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ACEGIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4GHA)

(-) Sites  (0, 0)

(no "Site" information available for 4GHA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GHA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GHA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GHA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GHA)

(-) Exons   (0, 0)

(no "Exon" information available for 4GHA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....eeee......hhhhhh.ee......hhhh.eeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gha A 208 LSAKDLALLLFTHLPGNNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSEGENAQAALTRLSRTFDAFLGVVPPVIRVKNFQTVPRPCQKSLRAVPPNPTIDKGWVCVYSSEQGETRALKI 329
                                   217       227       237       247       257       267       277       287       297       307       317       327  


Chain C from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....eee.......hhhhhh.ee......hhhh.eeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gha C 208 LSAKDLALLLFTHLPGNNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSEGENAQAALTRLSRTFDAFLGVVPPVIRVKNFQTVPRPCQKSLRAVPPNPTIDKGWVCVYSSEQGETRALKI 329
                                   217       227       237       247       257       267       277       287       297       307       317       327  


Chain E from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhh.ee......hhhh.eeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gha E 208 LSAKDLALLLFTHLPGNNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSEGENAQAALTRLSRTFDAFLGVVPPVIRVKNFQTVPRPCQKSLRAVPPNPTIDKGWVCVYSSEQGETRALKI 329
                                   217       227       237       247       257       267       277       287       297       307       317       327  


Chain G from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....eee.......hhhhhh.ee......hhhh.eeeeee.....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gha G 208 LSAKDLALLLFTHLPGNNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSEGENAQAALTRLSRTFDAFLGVVPPVIRVKNFQTVPRPCQKSLRAVPPNPTIDKGWVCVYSSEQGETRALKI 329
                                   217       227       237       247       257       267       277       287       297       307       317       327  


Chain I from PDB  Type:RNA  Length:12
                                            
                 4gha I   1 CUAGACGUCUAG  12
                                    10  


Chain J from PDB  Type:RNA  Length:12
                                            
                 4gha J   1 CUAGACGUCUAG  12
                                    10
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GHA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GHA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GHA)

(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VP35_MABVM | P35259: 4gh9 5toh 5toi

(-) Related Entries Specified in the PDB File

3fke 3l25 3l26 3la2 3sk8 4gh9