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(-) Description

Title :  SPINOSYN FOROSAMINYLTRANSFERASE SPNP
 
Authors :  E. A. Isiorho, H. -W. Liu, A. K. Keatinge-Clay
Date :  24 Jun 13  (Deposition) - 24 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glycosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Isiorho, B. -S. Jeon, H. -W. Liu, A. K. Keatinge-Clay
Spnp; Structural Insights Into The Activation Of Gt-1 Glycosyltransferases By Helper Proteins
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NDP-FOROSAMYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 17-455
    Gene: SPNP
    Organism Scientific: SACCHAROPOLYSPORA SPINOSA
    Organism Taxid: 60894

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LDP)

(-) Sites  (0, 0)

(no "Site" information available for 4LDP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LDP)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Leu A:259 -Ser A:260
2Gln A:272 -Glu A:273
3Glu A:273 -Gln A:274
4Glu A:299 -Val A:300
5Lys B:256 -Arg B:257
6Gly B:352 -Thr B:353

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LDP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LDP)

(-) Exons   (0, 0)

(no "Exon" information available for 4LDP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhh...eeee...........hhhhhhh.hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh......hhhhhh..eee..hhhhh......eee............hhhhhh.....eeee..hhhhhh....hhhhhhhhhhhhh...eeeee...........eeee...hhhhhhh...eeee..hhhhhhhhhhh...eee...hhhhhhhhhhh..eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ldp A  -1 SHMRVLFTPLPASSHFFNLVPLAWALRAAGHEVRVAICPNMVSMVTGAGLTAVPVGDELDLISLDAVEQLHLVDDRSLDDLMGFAEKWQPDLVVWDAMVCSGPVVARALGARHVRMLVALDVSGWLRSGFLEYQESKPPEQRVDPLGTWLGAKLAKFGATFDEEIVTGQATIDPIPSWMRLPVDLDYISMRFVPYNGPAVLPEWLRERPTKPRVCITRGLTKRRLSQEQAMVERLLRGAARLDVEVIATLSDDEVELPSNVRVHEYVPLNELLESCSVIIHHGSTTTQETATVNGVPQLILPDESRRAELLADRGAGLVLDPATFTEDDVRGQLARLLDEPSFAANAALIRREIEESPSPHDIVPRLEKLVAE 426
                                     8        18        28        38        48        58   ||  104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254     ||275       285       295    || 309       319       329       339       349 ||    363       373       383       393       403       413       423   
                                                                                          62|                                                                                                                                                              260|                         300|                                           351|                                                                      
                                                                                           99                                                                                                                                                               272                          305                                            356                                                                      


Chain B from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhh....eee........hhhhhh..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh......hhhhhh..eee..hhhhh......eee.........ee.hhhhhh.....eeee........hhhhhhhhhhhh...eeeee...........eeee...hhhhhhh.eeeeee..hhhhhhhhhhh...eee......hhhhhhhhhhhh..eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ldp B  -1 SHMRVLFTPLPASSHFFNLVPLAWALRAAGHEVRVAICPNMVSMVTGAGLTAVPVGDELDLDAVEQLHLVDDRSLDDLMGFAEKWQPDLVVWDAMVCSGPVVARALGARHVRMLVALDVSGWLRSGFLEYQESKPPEQRVDPLGTWLGAKLAKFGATFDEEIVTGQATIDPIPSWMRLPVDLDYISMRFVPYNGPAVLPEWLRERPTKPRVCITRGLTKRERLLRGAARLDVEVIATLSDDEVREMGELPSNVRVHEYVPLNELLESCSVIIHHGSTTTQETATVNGVPQLILPGTFWDESRRAELLADRGAGLVLDPATFTEDDVRGQLARLLDEPSFAANAALIRREIEESPSPHDIVPRLEKLVAE 426
                                     8        18        28        38        48        58||     107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257|      287       297       307       317       327       337       347       357       367       377       387       397       407       417         
                                                                                       59|                                                                                                                                                           257|                                                                                                                                                    
                                                                                        99                                                                                                                                                            278
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LDP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LDP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LDP)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
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  Cis Peptide Bonds
    Gln A:272 - Glu A:273   [ RasMol ]  
    Glu A:273 - Gln A:274   [ RasMol ]  
    Glu A:299 - Val A:300   [ RasMol ]  
    Gly B:352 - Thr B:353   [ RasMol ]  
    Leu A:259 - Ser A:260   [ RasMol ]  
    Lys B:256 - Arg B:257   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9ALN7_9PSEU | Q9ALN7: 4lei

(-) Related Entries Specified in the PDB File

4lei