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(-) Description

Title :  SPINOSYN FOROSAMINYLTRANSFERASE SPNP
 
Authors :  E. A. Isiorho, H. -W. Liu, A. K. Keatinge-Clay
Date :  25 Jun 13  (Deposition) - 10 Dec 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glycosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Isiorho, B. S. Jeon, N. H. Kim, H. W. Liu, A. T. Keatinge-Clay
Structural Studies Of The Spinosyn Forosaminyltransferase, Spnp.
Biochemistry V. 53 4292 2014
PubMed-ID: 24945604  |  Reference-DOI: 10.1021/BI5003629

(-) Compounds

Molecule 1 - NDP-FOROSAMYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 17-455
    Gene: SPNP
    Organism Scientific: SACCHAROPOLYSPORA SPINOSA
    Organism Taxid: 60894

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1TYD2Ligand/IonTHYMIDINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:12 , PHE A:15 , TYR A:229 , ASN A:230 , ARG A:252 , GLY A:253 , LEU A:254 , THR A:255 , LYS A:256 , THR A:294 , TYR A:315 , VAL A:316 , LEU A:318 , SER A:333 , THR A:334 , THR A:335 , THR A:336BINDING SITE FOR RESIDUE TYD A 501
2AC2SOFTWARESER B:11 , SER B:12 , PHE B:15 , TYR B:229 , ASN B:230 , LEU B:254 , THR B:255 , ASP B:298 , TYR B:315 , VAL B:316 , LEU B:318 , HIS B:331 , SER B:333 , THR B:335 , THR B:336BINDING SITE FOR RESIDUE TYD B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LEI)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Leu A:259 -Ser A:260
2Glu A:273 -Gln A:274
3Glu A:299 -Val A:300
4Gly B:253 -Leu B:254
5Leu B:254 -Thr B:255
6Lys B:256 -Arg B:257
7Gly B:352 -Thr B:353

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LEI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LEI)

(-) Exons   (0, 0)

(no "Exon" information available for 4LEI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh...eee...........hhhhhh..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhh.eeee..hhhhh......eee............hhhhh......eeee.............hhhhhhhhhhhhh...eeee............eee....hhhhhhh...eeee..hhhhhhhhhhh...eee...hhhhhhhhhhhh..eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lei A  -1 SHMRVLFTPLPASSHFFNLVPLAWALRAAGHEVRVAICPNMVSMVTGAGLTAVPVGDELDLISLDAVEQLHLVDDRSLDDLMGFAEKWQPDLVVWDAMVCSGPVVARALGARHVRMLVALDVSGWLRSGFLEYQESKPPEQRVDPLGTWLGAKLAKFGATFDEEIVTGQATIDPIPSWMRLPVDLDYISMRFVPYNGPAVLPEWLRERPTKPRVCITRGLTKRRLSRVEQAMVERLLRGAARLDVEVIATLSDDEVELPSNVRVHEYVPLNELLESCSVIIHHGSTTTQETATVNGVPQLILPWDESRRAELLADRGAGLVLDPATFTEDDVRGQLARLLDEPSFAANAALIRREIEESPSPHDIVPRLEKLVAE 426
                                     8        18        28        38        48        58   ||  104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       274       284       294     ||308       318       328       338       348  ||   361       371       381       391       401       411       421     
                                                                                          62|                                                                                                                                                                262|                        300|                                           351|                                                                       
                                                                                           99                                                                                                                                                                 273                         305                                            355                                                                       


Chain B from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhh...eee.................hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh....hhhhhhh..eee..hhhhh......eee............hhhhhh.....eeeee..........hhhhhhhhh......eee.............ee.....hhhhhh....eeee..hhhhhhhhhhh...eee......hhhhhhhhhhhh..eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lei B  -1 SHMRVLFTPLPASSHFFNLVPLAWALRAAGHEVRVAICPNMVSMVTGAGLTAVPVGDELDLTDAVEQLHLVDDRSLDDLMGFAEKWQPDLVVWDAMVCSGPVVARALGARHVRMLVALDVSGWLRSGFLEYQESKPPEQRVDPLGTWLGAKLAKFGATFDEEIVTGQATIDPIPSWMRLPVDLDYISMRFVPYNGPAVLPEWLRERPTKPRVCITRGLTKRRLSERLLRGAARLDVEVIATLSDDEVREMGELPSNVRVHEYVPLNELLESCSVIIHHGSTTTQETATVNGVPQLILPGTFWDESRRAELLADRGAGLVLDPATFTEDDVRGQLARLLDEPSFAANAALIRREIEESPSPHDIVPRLEKLVAE 426
                                     8        18        28        38        48        58||     106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256   ||  283       293       303       313       323       333       343       353       363       373       383       393       403       413       423   
                                                                                       59|                                                                                                                                                               260|                                                                                                                                                    
                                                                                        98                                                                                                                                                                278
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LEI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LEI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LEI)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Glu A:299 - Val A:300   [ RasMol ]  
    Gly B:253 - Leu B:254   [ RasMol ]  
    Gly B:352 - Thr B:353   [ RasMol ]  
    Leu A:259 - Ser A:260   [ RasMol ]  
    Leu B:254 - Thr B:255   [ RasMol ]  
    Lys B:256 - Arg B:257   [ RasMol ]  
 

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