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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF A PUTATIVE UDP-4-AMINO-4-DEOXY-L-ARABINOSE--OXOGLUTARATE AMINOTRANSFERASE FROM BURKHOLDERIA CENOCEPACIA
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  21 Jun 13  (Deposition) - 21 Aug 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Fairman, C. M. Lukacs, T. E. Edwards, D. Lorimer
X-Ray Crystal Structure Of A Putative Udp-4-Amino-4-Deoxy-L-Arabinose--Oxoglutarate Aminotransferase From Burkholderia Cenocepacia
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UDP-4-AMINO-4-DEOXY-L-ARABINOSE--OXOGLUTARATE AMINOTRANSFERASE
    Chains: A, B
    EC Number: 2.6.1.87
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ARNB, BCEJ2315_18950, BCAL1931
    Organism Scientific: BURKHOLDERIA CENOCEPACIA
    Organism Taxid: 216591
    Strain: J2315 / LMG 16656

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
2EDO9Ligand/Ion1,2-ETHANEDIOL
3GOL2Ligand/IonGLYCEROL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:60 , GLY A:61 , THR A:62 , TRP A:87 , SER A:182 , HIS A:184 , LYS A:187 , EDO A:403 , GOL A:406 , HOH A:526 , HOH A:528 , HOH A:743 , HOH A:756 , LEU B:213 , LYS B:232BINDING SITE FOR RESIDUE CIT A 401
02AC2SOFTWAREGLY A:231 , LYS A:232 , TYR A:233 , HOH A:703 , HOH A:1040 , THR B:62 , GLU B:66BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWARESER A:86 , TRP A:87 , THR A:90 , ASP A:158 , ALA A:160 , GLN A:161 , TYR A:324 , CIT A:401BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREGLU A:119 , ARG A:143 , ILE A:147 , ALA A:150BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREARG A:13 , PHE A:359 , GLN A:361 , ASP A:366 , HOH A:769 , HOH A:1007BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWAREHIS A:323 , TYR A:324 , CIT A:401 , HOH A:911 , HOH A:959 , ARG B:218BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWARELEU A:213 , LYS A:232 , SER B:60 , GLY B:61 , THR B:62 , TRP B:87 , ALA B:160 , SER B:182 , HIS B:184 , LYS B:187 , EDO B:405 , GOL B:407 , HOH B:519 , HOH B:521 , HOH B:677 , HOH B:796BINDING SITE FOR RESIDUE CIT B 401
08AC8SOFTWARELEU A:28 , GLY A:31 , PRO B:14 , GLU B:15 , ILE B:16 , HOH B:859BINDING SITE FOR RESIDUE EDO B 402
09AC9SOFTWARETHR A:62 , GLU A:66 , VAL A:93 , GLY B:231 , LYS B:232 , TYR B:233 , HOH B:666 , HOH B:729 , HOH B:975BINDING SITE FOR RESIDUE EDO B 403
10BC1SOFTWAREGLU B:119 , ARG B:143 , ARG B:262 , HOH B:672BINDING SITE FOR RESIDUE EDO B 404
11BC2SOFTWARESER B:86 , TRP B:87 , THR B:90 , ASP B:158 , ALA B:160 , GLN B:161 , TYR B:324 , CIT B:401BINDING SITE FOR RESIDUE EDO B 405
12BC3SOFTWAREARG B:336 , GLY B:337 , PHE B:338 , HOH B:816 , HOH B:831BINDING SITE FOR RESIDUE EDO B 406
13BC4SOFTWAREARG A:218 , HIS B:323 , TYR B:324 , CIT B:401 , HOH B:717BINDING SITE FOR RESIDUE GOL B 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LC3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1His A:323 -Tyr A:324
2His B:323 -Tyr B:324

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LC3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LC3)

(-) Exons   (0, 0)

(no "Exon" information available for 4LC3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4lc3a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....eeee...hhhhhhhhhhh......eeee.....hhhhhhhhhh..eeee..........hhhhhhhh....eeee...hhhhh..hhhhhhhhhhhh..eeeee.......ee..ee......eeeee............eeee..hhhhhhhhhhhhh..eeee...eeee.........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhh...............eeee.hhhhh..hhhhhhhhhhhh.........hhhhhhhhhh.......hhhhhhhhhheeee......hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lc3 A   6 APFLPFTRPEIDEETIQGVVEVLRSGWITTGPQCQKFEAALSEYCGGRPVRVFNSGTCTLEIGLRIAGVGPGDEVITTPASWVSTSNVIIETGATPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPVDMDRLYAIARAHKLRVIEDAAQAFGSTWHGKRIGAIGDLVSFSFHANKNLTTIEGGALVLNNEDEAVLAQKYRLQGITRTGFDGMDCDVLGGKYNLTDVAARVGLGQLPHLERFTAQRRALARAYFAAFDGGAAAKLGVGLPVAEFENGNWHMFLVTLPLERLTITRAEFMAQMKERGIGTGIHYPAIHLFTLYRARGFKEGMFPHAERYGASTVTLPLFTQMTEGDVRRVVDAVNQICEQYGK 383
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375        


Chain B from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4lc3b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....eeee...hhhhhhhhhhh......eeee.....hhhhhhhhhh..eeee..........hhhhhhhh....eeee...hhhhh..hhhhhhhhhhhh..eeeee.......ee..ee......eeeee............eeee..hhhhhhhhhhhhh..eeee...eeee.........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhh...............eeee.hhhhh..hhhhhhhhhhhh.........hhhhhhhhhh.......hhhhhhhhhheeee......hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lc3 B   6 APFLPFTRPEIDEETIQGVVEVLRSGWITTGPQCQKFEAALSEYCGGRPVRVFNSGTCTLEIGLRIAGVGPGDEVITTPASWVSTSNVIIETGATPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPVDMDRLYAIARAHKLRVIEDAAQAFGSTWHGKRIGAIGDLVSFSFHANKNLTTIEGGALVLNNEDEAVLAQKYRLQGITRTGFDGMDCDVLGGKYNLTDVAARVGLGQLPHLERFTAQRRALARAYFAAFDGGAAAKLGVGLPVAEFENGNWHMFLVTLPLERLTITRAEFMAQMKERGIGTGIHYPAIHLFTLYRARGFKEGMFPHAERYGASTVTLPLFTQMTEGDVRRVVDAVNQICEQYGK 383
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LC3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LC3)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    His A:323 - Tyr A:324   [ RasMol ]  
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