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4LC3
Asym. Unit
Info
Asym.Unit (286 KB)
Biol.Unit 1 (280 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF A PUTATIVE UDP-4-AMINO-4-DEOXY-L-ARABINOSE--OXOGLUTARATE AMINOTRANSFERASE FROM BURKHOLDERIA CENOCEPACIA
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
21 Jun 13 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. W. Fairman, C. M. Lukacs, T. E. Edwards, D. Lorimer
X-Ray Crystal Structure Of A Putative Udp-4-Amino-4-Deoxy-L-Arabinose--Oxoglutarate Aminotransferase From Burkholderia Cenocepacia
To Be Published
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
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Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:60 , GLY A:61 , THR A:62 , TRP A:87 , SER A:182 , HIS A:184 , LYS A:187 , EDO A:403 , GOL A:406 , HOH A:526 , HOH A:528 , HOH A:743 , HOH A:756 , LEU B:213 , LYS B:232
BINDING SITE FOR RESIDUE CIT A 401
02
AC2
SOFTWARE
GLY A:231 , LYS A:232 , TYR A:233 , HOH A:703 , HOH A:1040 , THR B:62 , GLU B:66
BINDING SITE FOR RESIDUE EDO A 402
03
AC3
SOFTWARE
SER A:86 , TRP A:87 , THR A:90 , ASP A:158 , ALA A:160 , GLN A:161 , TYR A:324 , CIT A:401
BINDING SITE FOR RESIDUE EDO A 403
04
AC4
SOFTWARE
GLU A:119 , ARG A:143 , ILE A:147 , ALA A:150
BINDING SITE FOR RESIDUE EDO A 404
05
AC5
SOFTWARE
ARG A:13 , PHE A:359 , GLN A:361 , ASP A:366 , HOH A:769 , HOH A:1007
BINDING SITE FOR RESIDUE EDO A 405
06
AC6
SOFTWARE
HIS A:323 , TYR A:324 , CIT A:401 , HOH A:911 , HOH A:959 , ARG B:218
BINDING SITE FOR RESIDUE GOL A 406
07
AC7
SOFTWARE
LEU A:213 , LYS A:232 , SER B:60 , GLY B:61 , THR B:62 , TRP B:87 , ALA B:160 , SER B:182 , HIS B:184 , LYS B:187 , EDO B:405 , GOL B:407 , HOH B:519 , HOH B:521 , HOH B:677 , HOH B:796
BINDING SITE FOR RESIDUE CIT B 401
08
AC8
SOFTWARE
LEU A:28 , GLY A:31 , PRO B:14 , GLU B:15 , ILE B:16 , HOH B:859
BINDING SITE FOR RESIDUE EDO B 402
09
AC9
SOFTWARE
THR A:62 , GLU A:66 , VAL A:93 , GLY B:231 , LYS B:232 , TYR B:233 , HOH B:666 , HOH B:729 , HOH B:975
BINDING SITE FOR RESIDUE EDO B 403
10
BC1
SOFTWARE
GLU B:119 , ARG B:143 , ARG B:262 , HOH B:672
BINDING SITE FOR RESIDUE EDO B 404
11
BC2
SOFTWARE
SER B:86 , TRP B:87 , THR B:90 , ASP B:158 , ALA B:160 , GLN B:161 , TYR B:324 , CIT B:401
BINDING SITE FOR RESIDUE EDO B 405
12
BC3
SOFTWARE
ARG B:336 , GLY B:337 , PHE B:338 , HOH B:816 , HOH B:831
BINDING SITE FOR RESIDUE EDO B 406
13
BC4
SOFTWARE
ARG A:218 , HIS B:323 , TYR B:324 , CIT B:401 , HOH B:717
BINDING SITE FOR RESIDUE GOL B 407
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4lc3a_ (A:)
1b: SCOP_d4lc3b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Burkholderia cenocepacia [TaxId: 216591]
(1)
1a
d4lc3a_
A:
1b
d4lc3b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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