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(-) Description

Title :  CRYSTAL STRUCTURE OF PKZ ZALPHA IN COMPLEX WITH DS(CG)6 (TETRAGONAL FORM)
 
Authors :  M. De Rosa, S. Zacarias, A. Athanasiadis
Date :  20 Jun 13  (Deposition) - 18 Sep 13  (Release) - 04 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  B,C
Biol. Unit 1:  B,C  (4x)
Keywords :  Whth, Zalpha, Zbd, Kinase, Innate Immunity, Z-Dna, Z-Rna, Eif2A, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. De Rosa, S. Zacarias, A. Athanasiadis
Structural Basis For Z-Dna Binding And Stabilization By The Zebrafish Z-Dna Dependent Protein Kinase Pkz.
Nucleic Acids Res. V. 41 9924 2013
PubMed-ID: 23975196  |  Reference-DOI: 10.1093/NAR/GKT743

(-) Compounds

Molecule 1 - PROTEIN KINASE CONTAINING Z-DNA BINDING DOMAINS
    Chains: B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Fragment: ZALPHA DOMAIN, UNP RESIDUES 5-70
    Gene: PKZ
    Organism Common: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955
    Synonym: UNCHARACTERIZED PROTEIN, Z-DNA BINDING PROTEIN KINASE
 
Molecule 2 - 5'-D(*TP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3'
    Chains: C
    Engineered: YES
    Other Details: SYNTHETIC OLIGONUCLEOTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : BC
Biological Unit 1 (4x): BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LB6)

(-) Sites  (0, 0)

(no "Site" information available for 4LB6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LB6)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LB6)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4LB6)

(-) Sequences/Alignments

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Chain B from PDB  Type:PROTEIN  Length:63
                                                                                              
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee.......eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  4lb6 B  7 ENEIEMRICDYLRRHGRSTVQDIFKELKLEKSTVNRHLYSLQASKQVFKTVEDNKRPVWNLVE 69
                                    16        26        36        46        56        66   


Chain C from PDB  Type:DNA  Length:6
                                     
                  4lb6 C  8 CGCGCG 13
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LB6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LB6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LB6)

(-) Gene Ontology  (18, 18)

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 Related Entries

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UniProtKB/TrEMBL
        Q5NE14_DANRE | Q5NE14: 4lb5

(-) Related Entries Specified in the PDB File

4lb5