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(-) Description

Title :  CRYSTAL STRUCTURE OF PKZ ZALPHA IN COMPLEX WITH DS(CG)6 (HEXAGONAL FORM)
 
Authors :  M. De Rosa, S. Zacarias, A. Athanasiadis
Date :  20 Jun 13  (Deposition) - 18 Sep 13  (Release) - 04 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Whth, Zalpha, Zbd, Kinase, Innate Immunity, Z-Dna, Z-Rna, Eif2A, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. De Rosa, S. Zacarias, A. Athanasiadis
Structural Basis For Z-Dna Binding And Stabilization By The Zebrafish Z-Dna Dependent Protein Kinase Pkz.
Nucleic Acids Res. V. 41 9924 2013
PubMed-ID: 23975196  |  Reference-DOI: 10.1093/NAR/GKT743

(-) Compounds

Molecule 1 - PROTEIN KINASE CONTAINING Z-DNA BINDING DOMAINS
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Fragment: ZALPHA DOMAIN, UNP RESIDUES 5-70
    Gene: PKZ
    Organism Common: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955
    Synonym: UNCHARACTERIZED PROTEIN, Z-DNA BINDING PROTEIN KINASE
 
Molecule 2 - 5'-D(*TP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3'
    Chains: C
    Engineered: YES
    Other Details: SYNTHETIC OLIGONUCLEOTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:36 , THR A:39BINDING SITE FOR RESIDUE ACT A 101
2AC2SOFTWAREHIS A:21 , GLY A:22 , ARG A:23BINDING SITE FOR RESIDUE ACT A 102
3AC3SOFTWARELYS B:61 , ARG B:62BINDING SITE FOR RESIDUE ACT B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LB5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LB5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4LB5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:57
                                                                                        
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                  4lb5 A  9 EIEMRICDYLRRHGRSTVQDIFKELKLEKSTVNRHLYSLQASKQVFKTVKRPVWNLV 68
                                    18        28        38        48        61       
                                                                           57|       
                                                                            61       


Chain B from PDB  Type:PROTEIN  Length:63
                                                                                              
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee.......eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  4lb5 B  7 ENEIEMRICDYLRRHGRSTVQDIFKELKLEKSTVNRHLYSLQASKQVFKTVEDNKRPVWNLVE 69
                                    16        26        36        46        56        66   


Chain C from PDB  Type:DNA  Length:13
                                            
                  4lb5 C  0 TCGCGCGCGCGCG 12
                                     9
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LB5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LB5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LB5)

(-) Gene Ontology  (18, 18)

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        Q5NE14_DANRE | Q5NE14: 4lb6

(-) Related Entries Specified in the PDB File

4lb6