4L76 - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CA2+-BOUND E212Q MUTANT MTHK RCK DOMAIN

Authors :   F. J. Smith, B. S. Rothberg

Date :   13 Jun 13 (Deposition) - 23 Oct 13 (Release) - 13 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.99

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Rossmann Fold, Regulatory Domain, Calcium Binding, Membrane- Associated, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. J. Smith, V. P. Pau, G. Cingolani, B. S. Rothberg
Structural Basis Of Allosteric Interactions Among Ca(2+)-Binding Sites In A K(+) Channel Rck Domain.
Nat Commun V. 4 2621 2013
PubMed-ID: 24126388 | Reference-DOI: 10.1038/NCOMMS3621

Molecule 1 - CALCIUM-GATED POTASSIUM CHANNEL MTHK
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	RCK DOMAIN (UNP RESIDUES 107-336)
	Gene	:	MTHK, MTH_1520
	Mutation	:	YES
	Organism Scientific	:	METHANOTHERMOBACTER THERMAUTOTROPHICUS
	Organism Taxid	:	187420
	Strain	:	ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / DELTA H

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 15)

No.	Name	Count	Type	Full Name
1	CA	13	Ligand/Ion	CALCIUM ION
2	NA	2	Ligand/Ion	SODIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:184 , GLU A:210 , GLN A:212	BINDING SITE FOR RESIDUE CA A 401
02	AC2	SOFTWARE	GLY A:290 , GLU A:326 , ASP B:305	BINDING SITE FOR RESIDUE CA A 402
03	AC3	SOFTWARE	ASP B:184 , GLU B:210 , GLN B:212	BINDING SITE FOR RESIDUE CA B 401
04	AC4	SOFTWARE	ASP A:305 , ARG B:262 , GLY B:290 , GLU B:326	BINDING SITE FOR RESIDUE CA B 402
05	AC5	SOFTWARE	GLY B:177 , ASP B:202	BINDING SITE FOR RESIDUE NA B 403
06	AC6	SOFTWARE	ASP C:184 , GLU C:210 , GLN C:212	BINDING SITE FOR RESIDUE CA C 401
07	AC7	SOFTWARE	GLY C:290 , GLU C:326 , ASP D:305	BINDING SITE FOR RESIDUE CA C 402
08	AC8	SOFTWARE	ASP C:305 , GLY D:290 , GLU D:326	BINDING SITE FOR RESIDUE CA D 401
09	AC9	SOFTWARE	ASP D:184 , GLU D:210 , GLN D:212	BINDING SITE FOR RESIDUE CA D 402
10	BC1	SOFTWARE	SER D:137 , GLY D:156	BINDING SITE FOR RESIDUE NA D 403
11	BC2	SOFTWARE	GLU C:266 , ARG D:241 , ASP D:245 , GLU D:248	BINDING SITE FOR RESIDUE CA D 404
12	BC3	SOFTWARE	GLY E:290 , GLU E:326 , ASP F:305	BINDING SITE FOR RESIDUE CA E 401
13	BC4	SOFTWARE	ASP E:305 , GLY F:290 , GLU F:326	BINDING SITE FOR RESIDUE CA E 402
14	BC5	SOFTWARE	SER E:124 , ASP E:184 , GLU E:210 , GLN E:212	BINDING SITE FOR RESIDUE CA E 403
15	BC6	SOFTWARE	SER F:124 , ASP F:184 , GLU F:210	BINDING SITE FOR RESIDUE CA F 401

(no "SS Bond" information available for 4L76)

(no "Cis Peptide Bond" information available for 4L76)

(no "SAP(SNP)/Variant" information available for 4L76)

(no "PROSITE Motif" information available for 4L76)

(no "Exon" information available for 4L76)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains d4l76a1 A:113-244 automated matches                                                                                                 d4l76a2 A:245-339 automated matches                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..hhhhhhhhh......eeeee.hhhhhhhhhh...eeee....hhhhhhhh......eeee...hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhh..eeehhhhhhhhhhh.....hhhhhhhhhhh......eeeeee..........hhhhhhhhhhhh.eeeeeee..eeee............eeeeeehhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l76 A 113 AKSRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAQRYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISALVP 339
                                   122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332

Chain B from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                
               SCOP domains d4l76b1 B:115-244 automated matches                                                                                               d4l76b2 B:245-338 automated matches                                                            SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhh......eeeee.hhhhhhhhhh...eeee....hhhhhhhh......eeee...hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhh..eeehhhhhhhhhhhh....hhhhhhhhhhh......eeeeee..........hhhhhhhhhhh..eeeeeee..eeee............eeeeeehhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l76 B 115 SRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAQRYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISALV 338
                                   124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334

Chain C from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains d4l76c1 C:116-244 automated matches                                                                                              d4l76c2 C:245-336 automated matches                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhh.....eeeeee.hhhhhhhhhh...eeee....hhhhhhh........eee...hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhh..eeehhhhhhhhhhhhh...hhhhhhhhhhh......eeeeee..........hhhhhhhhhhhh.eeeeeee..eeee............eeeeeehhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l76 C 116 RHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAQRYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA 336
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335

Chain D from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains d4l76d1 D:116-244 automated matches                                                                                              d4l76d2 D:245-337 automated matches                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhh......eeeee.hhhhhhhhhhh..eeee....hhhhhhh.....eeeeee...hhhhhhhhhhhhhh.....eeeee..hhhhhhhhhhhh..eeehhhhhhhhhhhh....hhhhhhhhhhh......eeeeee..........hhhhhhhhhhh..eeeeeee..eeee............eeeeeehhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4l76 D 116 RHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAQRYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISAL 337
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335

Chain E from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains d4l76e1 E:115-244 automated matches                                                                                               d4l76e2 E:245-337 automated matches                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhh......eeeee.hhhhhhhhhhh..eeee....hhhhhhh.......eeee...hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhh..eeehhhhhhhhhhhh....hhhhhhhhhhh......eeeeee..........hhhhhhhhhhhh.eeeeeee..eeee............eeeeeehhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l76 E 115 SRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAQRYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISAL 337
                                   124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334

Chain F from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains d4l76f1 F:116-244 automated matches                                                                                              d4l76f2 F:245-338 automated matches                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhh.....eeeeee.hhhhhhhhhh...eeee....hhhhhhh.......eeee...hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhh..eeehhhhhhhhhhhh....hhhhhhhhhhh......eeeeee..........hhhhhhhhhhhh.eeeeeee..eeee............eeeeeehhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l76 F 116 RHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAQRYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISALV 338
                                   125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: TrkA C-terminal domain-like (15)

Superfamily: TrkA C-terminal domain-like (15)

Family: automated matches (6)

Protein domain: automated matches (6)

Methanothermobacter thermautotrophicus [TaxId: 187420] (6)

1a	d4l76a2	A:245-339
1b	d4l76b2	B:245-338
1c	d4l76c2	C:245-336
1d	d4l76d2	D:245-337
1e	d4l76e2	E:245-337
1f	d4l76f2	F:245-338

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Potassium channel NAD-binding domain (19)

Protein domain: automated matches (6)

Methanothermobacter thermautotrophicus [TaxId: 187420] (6)

2a	d4l76a1	A:113-244
2b	d4l76b1	B:115-244
2c	d4l76c1	C:116-244
2d	d4l76d1	D:116-244
2e	d4l76e1	E:115-244
2f	d4l76f1	F:116-244

(no "CATH Domain" information available for 4L76)

(no "Pfam Domain" information available for 4L76)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	4l76
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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (2, 15)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Gene Ontology (10, 10)

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