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(-) Description

Title :  CRYSTAL STRUCTURE OF 26 KDA GST D26H MUTANT OF CLONORCHIS SINENSIS
 
Authors :  Y. J. Chung, Y. H. Han
Date :  11 Jun 13  (Deposition) - 11 Sep 13  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Transferase, Gsh Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. H. Han, S. J. Hong, H. K. Cheong, Y. J. Chung
Crystal Structures Of 26Kda Clonorchis Sinensis Glutathione S-Transferase Reveal Zinc Binding And Putative Metal Binding.
Biochem. Biophys. Res. Commun. V. 438 457 2013
PubMed-ID: 23916611  |  Reference-DOI: 10.1016/J.BBRC.2013.07.102

(-) Compounds

Molecule 1 - PUTATIVE GLUTATHIONE TRANSFERASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET25B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: ORIENTAL LIVER FLUKE
    Organism Scientific: CLONORCHIS SINENSIS
    Organism Taxid: 79923

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1GSH3Ligand/IonGLUTATHIONE
2SO46Ligand/IonSULFATE ION
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1GSH2Ligand/IonGLUTATHIONE
2SO42Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 10)
No.NameCountTypeFull Name
1GSH2Ligand/IonGLUTATHIONE
2SO48Ligand/IonSULFATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:7 , TRP A:8 , LEU A:13 , TRP A:41 , LYS A:45 , ASN A:54 , LEU A:55 , GLN A:67 , SER A:68 , HOH A:402 , HOH A:405 , HOH A:414 , ASP B:101 , HOH B:416BINDING SITE FOR RESIDUE GSH A 301
02AC2SOFTWAREARG A:35 , GLY A:213 , ASP A:214BINDING SITE FOR RESIDUE SO4 A 302
03AC3SOFTWAREHIS A:26 , HIS A:79 , HIS C:26 , HIS C:79BINDING SITE FOR RESIDUE ZN A 303
04AC4SOFTWAREASP A:101 , TYR B:7 , TRP B:8 , LEU B:13 , TRP B:41 , LYS B:45 , ASN B:54 , LEU B:55 , PRO B:56 , GLN B:67 , SER B:68 , HOH B:404 , HOH B:405BINDING SITE FOR RESIDUE GSH B 301
05AC5SOFTWAREASN B:140 , SER B:141 , SER B:146BINDING SITE FOR RESIDUE SO4 B 302
06AC6SOFTWAREHIS B:26 , HIS B:79BINDING SITE FOR RESIDUE ZN B 303
07AC7SOFTWARETYR C:7 , TRP C:8 , LEU C:13 , TRP C:41 , LYS C:45 , ASN C:54 , LEU C:55 , PRO C:56 , GLN C:67 , SER C:68 , ASP C:101 , HOH C:411BINDING SITE FOR RESIDUE GSH C 301
08AC8SOFTWAREHIS A:26 , LYS A:78 , HIS C:26 , LYS C:78BINDING SITE FOR RESIDUE SO4 C 302
09AC9SOFTWAREARG C:35 , GLY C:213 , ASP C:214BINDING SITE FOR RESIDUE SO4 C 303
10BC1SOFTWAREASN C:140 , SER C:141 , SER C:146BINDING SITE FOR RESIDUE SO4 C 304
11BC2SOFTWAREARG C:182BINDING SITE FOR RESIDUE SO4 C 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L5O)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu A:55 -Pro A:56
2Trp A:201 -Pro A:202
3Leu B:55 -Pro B:56
4Trp B:201 -Pro B:202
5Leu C:55 -Pro C:56
6Trp C:201 -Pro C:202

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L5O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L5O)

(-) Exons   (0, 0)

(no "Exon" information available for 4L5O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d4l5oa1 A:1-80 automated matches                                                d4l5oa2 A:81-217 automated matches                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhh..........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l5o A   1 MAPVLGYWKIRGLAQPIRLLLEYVGHSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYIADKHNMIGNTPVERAKISMIEGGLVDLRAGVSRIAYQETFEQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYLDPTSVEAFPNLMQFIHRIEALPNIKAFMESDRFIKWPLNGWSAYFGGGDAPP 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain B from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d4l5ob1 B:1-80 automated matches                                                d4l5ob2 B:81-217 automated matches                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhhhhhhhhh...eeeee...hhhhhhhhhhhh........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l5o B   1 MAPVLGYWKIRGLAQPIRLLLEYVGHSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYIADKHNMIGNTPVERAKISMIEGGLVDLRAGVSRIAYQETFEQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYLDPTSVEAFPNLMQFIHRIEALPNIKAFMESDRFIKWPLNGWSAYFGGGDAPP 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain C from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d4l5oc1 C:1-80 automated matches                                                d4l5oc2 C:81-217 automated matches                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhh..........eeee..eeeehhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l5o C   1 MAPVLGYWKIRGLAQPIRLLLEYVGHSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYIADKHNMIGNTPVERAKISMIEGGLVDLRAGVSRIAYQETFEQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYLDPTSVEAFPNLMQFIHRIEALPNIKAFMESDRFIKWPLNGWSAYFGGGDAPP 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L5O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L5O)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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        Q25595_CLOSI | Q25595: 3iso 4l5l

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3iso 4l5l