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(-) Description

Title :  CRYSTAL STRUCTURE OF 26 KDA GST OF CLONORCHIS SINENSIS IN P212121 SYMMETRY
 
Authors :  Y. J. Chung, Y. H. Han
Date :  11 Jun 13  (Deposition) - 04 Sep 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Gsh Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. H. Han, S. J. Hong, H. K. Cheong, Y. J. Chung
Crystal Structures Of 26Kda Clonorchis Sinensis Glutathione S-Transferase Reveal Zinc Binding And Putative Metal Binding.
Biochem. Biophys. Res. Commun. V. 438 457 2013
PubMed-ID: 23916611  |  Reference-DOI: 10.1016/J.BBRC.2013.07.102

(-) Compounds

Molecule 1 - PUTATIVE GLUTATHIONE TRANSFERASE
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET25B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism CommonORIENTAL LIVER FLUKE
    Organism ScientificCLONORCHIS SINENSIS
    Organism Taxid79923

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1GSH2Ligand/IonGLUTATHIONE
2MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3ZN2Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:7 , TRP A:8 , LEU A:13 , TRP A:41 , LYS A:45 , ASN A:54 , LEU A:55 , PRO A:56 , GLN A:67 , SER A:68 , HOH A:401 , ASP B:101BINDING SITE FOR RESIDUE GSH A 301
2AC2SOFTWAREVAL A:24 , ASP A:26 , HIS A:46 , HIS A:79BINDING SITE FOR RESIDUE ZN A 302
3AC3SOFTWARETYR A:23 , VAL A:24 , LEU A:186 , PRO A:187 , ASN A:188BINDING SITE FOR RESIDUE MES A 303
4AC4SOFTWAREASP A:101 , HOH A:472 , TYR B:7 , TRP B:8 , TRP B:41 , LYS B:45 , ASN B:54 , LEU B:55 , PRO B:56 , GLN B:67 , SER B:68 , HOH B:401BINDING SITE FOR RESIDUE GSH B 301
5AC5SOFTWAREASP B:26 , HIS B:46 , HIS B:79BINDING SITE FOR RESIDUE ZN B 302
6AC6SOFTWARETYR B:23 , VAL B:24 , PRO B:187 , ASN B:188BINDING SITE FOR RESIDUE MES B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L5L)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Leu A:55 -Pro A:56
2Trp A:201 -Pro A:202
3Leu B:55 -Pro B:56
4Trp B:201 -Pro B:202

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L5L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L5L)

(-) Exons   (0, 0)

(no "Exon" information available for 4L5L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d4l5la1 A:1-80 automated matches                                                d4l5la2 A:81-217 automated matches                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhhhhhhhhh...eeeee...hhhhhhhhhhhh........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l5l A   1 MAPVLGYWKIRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYIADKHNMIGNTPVERAKISMIEGGLVDLRAGVSRIAYQETFEQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYLDPTSVEAFPNLMQFIHRIEALPNIKAFMESDRFIKWPLNGWSAYFGGGDAPP 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       

Chain B from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d4l5lb1 B:1-80 automated matches                                                d4l5lb2 B:81-217 automated matches                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhhhhhhhhh...eeeee...hhhhhhhhhhhh........eeee..eeeehhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l5l B   1 MAPVLGYWKIRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYIADKHNMIGNTPVERAKISMIEGGLVDLRAGVSRIAYQETFEQLKVPYLQQLPSTLRMWSQFLGNNSYLHGSTPTHLDFMFYEALDVIRYLDPTSVEAFPNLMQFIHRIEALPNIKAFMESDRFIKWPLNGWSAYFGGGDAPP 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L5L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L5L)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q25595_CLOSI | Q255953iso 4l5o

(-) Related Entries Specified in the PDB File

3iso 4l5o