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(-) Description

Title :  STRUCTURE OF THE CARBOHYDRATE-RECOGNITION DOMAIN OF THE C-TYPE LECTIN MINCLE
 
Authors :  H. Feinberg, S. A. F. Jegouzo, T. J. W. Rowntree, Y. Guan, M. A. Brash, M. E W. I. Weis, K. Drickamer
Date :  30 May 13  (Deposition) - 28 Aug 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  C-Type Lectin, Carbohydrate Recognition Domain, Carbohydrate-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Feinberg, S. A. Jegouzo, T. J. Rowntree, Y. Guan, M. A. Brash, M. E. Taylor, W. I. Weis, K. Drickamer
Mechanism For Recognition Of An Unusual Mycobacterial Glycolipid By The Macrophage Receptor Mincle.
J. Biol. Chem. V. 288 28457 2013
PubMed-ID: 23960080  |  Reference-DOI: 10.1074/JBC.M113.497149

(-) Compounds

Molecule 1 - C-TYPE LECTIN MINCLE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT5T
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CARBOHYDRATE RECOGNITION DOMAIN (UNP RESIDUES 79-208)
    Gene: CLEC4E
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2FLC1Ligand/IonCITRATE ANION
3NA1Ligand/IonSODIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FLC1Ligand/IonCITRATE ANION
3NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2FLC-1Ligand/IonCITRATE ANION
3NA-1Ligand/IonSODIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:168 , ASN A:170 , ASN A:192 , ASP A:193 , CA A:302 , HOH A:451 , HOH A:457 , HOH A:476 , HOH A:481 , HIS B:85 , GLN B:87BINDING SITE FOR RESIDUE FLC A 301
2AC2SOFTWAREGLU A:168 , ASN A:170 , ASN A:192 , ASP A:193 , FLC A:301BINDING SITE FOR RESIDUE CA A 302
3AC3SOFTWAREVAL A:116 , ASN A:118 , GLU A:122 , GLU A:205 , HOH A:401 , HOH A:402BINDING SITE FOR RESIDUE CA A 303
4AC4SOFTWAREGLU A:146 , LEU A:172 , VAL A:175 , ASP A:177 , HOH A:472 , HOH A:475BINDING SITE FOR RESIDUE NA A 304
5AC5SOFTWAREGLU B:168 , ASN B:170 , ASN B:192 , ASP B:193BINDING SITE FOR RESIDUE CA B 400
6AC6SOFTWAREVAL B:116 , ASN B:118 , GLU B:122 , GLU B:205 , HOH B:501 , HOH B:502BINDING SITE FOR RESIDUE CA B 401

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:79 -A:90
2A:107 -A:204
3A:178 -A:196
4B:79 -B:90
5B:107 -B:204
6B:178 -B:196

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:168 -Pro A:169
2Glu B:168 -Pro B:169

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KZW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KZW)

(-) Exons   (0, 0)

(no "Exon" information available for 4KZW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains d4kzwa_ A: automated matches                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhh.....eeeeeeeeee..eeee.........................eeeee.........eeeee.....eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kzw A  79 CPLKWFHFQSSCYLFSPDTMSWRASLKNCSSMGAHLVVINTQEEQEFLYYTKPRKKEFYIGLTDQVTEGQWQWVDGTPFTKSLSFWDAGEPNNLVTVEDCATIRDSSNPRQNWNDVPCFFNMFRVCEMPERKI 211
                                    88        98       108       118       128       138       148       158       168       178       188       198       208   


Chain B from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains d4kzwb_ B: automated matches                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhh.....eeeeee........ee......hhhhh...........eeeee.........eeeee.....eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kzw B  78 ACPLKWFHFQSSCYLFSPDTMSWRASLKNCSSMGAHLVVINTQEEQEFLYYTKPRKKEFYIGLTDQVTEGQWQWVDGTPFTKSLSFWDAGEPNNVEDCATIRDSSNPRQNWNDVPCFFNMFRVCEMPERKI 211
                                    87        97       107       117       127       137       147       157       167   ||  180       190       200       210 
                                                                                                                       171|                                    
                                                                                                                        175
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KZW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KZW)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E1BHM0_BOVIN | E1BHM0: 4kzv 4zrv 4zrw 5kth 5kti

(-) Related Entries Specified in the PDB File

4kzv