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(-) Description

Title :  CRYSTAL STRUCTURE OF DEHALOGENASE HALOTAG2 WITH HALTS AT THE RESOLUTION 1.8A. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR150
 
Authors :  A. Kuzin, S. Lew, J. Seetharaman, M. Maglaqui, R. Xiao, E. Kohan, H. Wang J. K. Everett, G. Acton, T. B. , Kornhaber, G. T. Montelione, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  29 May 13  (Deposition) - 24 Jul 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Halts, Halogenase, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kuzin, S. Lew, J. Seetharaman, M. Maglaqui, R. Xiao, E. Kohan, H. Wang, J. K. Everett, G. Acton, T. B. , Kornhaber, G. T. Montelione, J. F. Hunt, L. Tong
Northeast Structural Genomics Consortium Target Or150
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DEHALOGENASE HALOTAG2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15_NESG
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
11Q92Ligand/IonN-(2-ETHOXY-3,5-DIMETHYLBENZYL)-1H-TETRAZOL-5-AMINE
2MSE12Mod. Amino AcidSELENOMETHIONINE
3NA4Ligand/IonSODIUM ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
11Q91Ligand/IonN-(2-ETHOXY-3,5-DIMETHYLBENZYL)-1H-TETRAZOL-5-AMINE
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
11Q91Ligand/IonN-(2-ETHOXY-3,5-DIMETHYLBENZYL)-1H-TETRAZOL-5-AMINE
2MSE6Mod. Amino AcidSELENOMETHIONINE
3NA-1Ligand/IonSODIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:53 , ASP A:117 , TRP A:118 , TRP A:152 , ALA A:156 , PHE A:160 , PHE A:179 , ALA A:183 , PRO A:217 , LEU A:220 , VAL A:256 , PHE A:283BINDING SITE FOR RESIDUE 1Q9 A 401
2AC2SOFTWAREASN A:61 , HIS A:65 , ASP A:291 , HOH A:599BINDING SITE FOR RESIDUE NA A 402
3AC3SOFTWAREASN A:52 , PHE A:179 , LEU A:213 , PRO A:217BINDING SITE FOR RESIDUE NA A 403
4AC4SOFTWAREASN B:52 , PRO B:53 , ASP B:117 , TRP B:118 , TRP B:152 , PHE B:160 , PHE B:179 , ALA B:183 , MSE B:186 , PRO B:217 , LEU B:220 , VAL B:256 , PHE B:283BINDING SITE FOR RESIDUE 1Q9 B 401
5AC5SOFTWAREASN B:61 , HIS B:65 , ASP B:291 , HOH B:623BINDING SITE FOR RESIDUE NA B 402
6AC6SOFTWAREASN B:52 , PHE B:179 , LEU B:213 , PRO B:217BINDING SITE FOR RESIDUE NA B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KYV)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:52 -Pro A:53
2Glu A:225 -Pro A:226
3Thr A:253 -Pro A:254
4Asn B:52 -Pro B:53
5Glu B:225 -Pro B:226
6Thr B:253 -Pro B:254

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KYV)

(-) Exons   (0, 0)

(no "Exon" information available for 4KYV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kyv A   4 HHHHHEIGTGFPFDPHYVEVLGERmHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGmGKSDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACmEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPmGVVRPLTEVEmDHYREPFLKPVDREPLWRLPNELPIAGEPANIVALVEAYmNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLFLLQEDNPDLIGSEIARWLPGLAG 306
                                ||  18        28    |   38        48        58        68        78 |      88        98       108       118       128       138 |     148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298        
                                8|                 33-MSE                                         80-MSE                                                     140-MSE                                       186-MSE    197-MSE                                 237-MSE                                                                 
                                14                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................eeeee..eeeeeeee.......eeee.....hhhhhh.hhhhhh....eeee...............hhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhh..hhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kyv B   4 HHHHHSSEIGTGFPFDPHYVEVLGERmHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGmGKSDKPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACmEFIRPIPTWDEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPmGVVRPLTEVEmDHYREPFLKPVDREPLWRLPNELPIAGEPANIVALVEAYmNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNCKTVDIGPGLFLLQEDNPDLIGSEIARWLPGLAG 306
                                 || 16        26      | 36        46        56        66        76   |    86        96       106       116       126       136   |   146       156       166       176       186       196|      206       216       226       236|      246       256       266       276       286       296       306
                                 9|                  33-MSE                                         80-MSE                                                     140-MSE                                       186-MSE    197-MSE                                 237-MSE                                                                 
                                 13
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KYV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KYV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KYV)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4KYV)

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(-) Related Entries Specified in the PDB File

4kac 100% IDENTITY RELATED ID: NESG-OR150 RELATED DB: TARGETTRACK