4KVA - JenaLib

Title :   GTPASE DOMAIN OF SEPTIN 10 FROM SCHISTOSOMA MANSONI IN COMPLEX WITH GTP

Authors :   A. E. Zeraik, H. M. Pereira, Y. V. Santos, J. Brandao-Neto, R. C. Garratt A. P. U. Araujo, R. Demarco

Date :   22 May 13 (Deposition) - 05 Feb 14 (Release) - 02 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.14

Chains :   Asym./Biol. Unit : A,B

Keywords :   Small Gtpase, Cytoskeleton Component, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. E. Zeraik, H. M. Pereira, Y. V. Santos, J. Brandao-Neto, M. Spoerner M. S. Santos, L. A. Colnago, R. C. Garratt, A. P. Araujo, R. Demarco
Crystal Structure Of A Schistosoma Mansoni Septin Reveals The Phenomenon Of Strand Slippage In Septins Dependent On The Nature Of The Bound Nucleotide.
J. Biol. Chem. V. 289 7799 2014
PubMed-ID: 24464615 | Reference-DOI: 10.1074/JBC.M113.525352

Compounds

Molecule 1 - SEPTIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SEPTIN 10, SMP_029890
	Organism Common	:	BLOOD FLUKE
	Organism Scientific	:	SCHISTOSOMA MANSONI
	Organism Taxid	:	6183

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:50 , GLY A:51 , ILE A:52 , GLY A:53 , LYS A:54 , SER A:55 , THR A:56 , GLU A:100 , LYS A:184 , ASP A:186 , VAL A:237 , GLY A:238 , ARG A:253 , TYR A:255 , MG A:501 , HOH A:617 , HOH A:630 , HOH A:664 , HOH A:672 , HOH A:691 , THR B:157 , THR B:187 , GLU B:192	BINDING SITE FOR RESIDUE GTP A 500
2	AC2	SOFTWARE	SER A:55 , GLU A:100 , GTP A:500 , HOH A:690 , HOH A:691	BINDING SITE FOR RESIDUE MG A 501
3	AC3	SOFTWARE	THR A:187 , GLU A:192 , THR B:50 , GLY B:51 , ILE B:52 , GLY B:53 , LYS B:54 , SER B:55 , THR B:56 , GLU B:100 , LYS B:184 , ASP B:186 , VAL B:237 , GLY B:238 , ARG B:253 , TYR B:255 , MG B:501 , HOH B:610 , HOH B:621 , HOH B:628 , HOH B:637	BINDING SITE FOR RESIDUE GTP B 500
4	AC4	SOFTWARE	SER B:55 , GLU B:100 , GTP B:500 , HOH B:610 , HOH B:699	BINDING SITE FOR RESIDUE MG B 501

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhh.......eeeeeeee..eeeeeeee........hhhhhhhhhhhhhhhhhhhhh..............eeeeee.......hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhh..ee.....eee..eeeeee..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kva A  40 FVFNILCVGETGIGKSTLLETLFNQKFDFPKLKAVTYDLKKLKLTVVETCGYGDENNIKPVVDYIDNQFENYLQEELKMKRSMQAFHDTRVHVCLYFIAPTGHSLKSIDLVAMKKLENKVNVIPVIAKSDTITKSELQKFKARILSEIQSNEIGIYQFPTDDEAVSETNSVMNQHIPFAVVGSSEEVKTVRVRQYPWGSVQVENENHCDFVRLREMLLRVNMEDLRERTHGVHYETYRRQRLIEMG 306
                                    49        59        78        88|      102   ||  116       126       136       146       156       166       176       186       196       206       216       226       236       250       260       270       280       290       300      
                                                       68|        88|          106|                                                                                                                                  244|                                                         
                                                        78         93           111                                                                                                                                   249

Chain B from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhh........eeeeeeeeee..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh..............eeeeee.......hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhh.ee......eeee..eeeeeeee..eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kva B  40 FVFNILCVGETGIGKSTLLETLFNQKFDFSPKLKAVTYDLKEANVKLKLTVVETCGYGDQNKENNIKPVVDYIDNQFENYLQEELKMKRSMQAFHDTRVHVCLYFIAPTGHSLKSIDLVAMKKLENKVNVIPVIAKSDTITKSELQKFKARILSEIQSNEIGIYQFPTDDEAVSETNSVMNQHIPFAVVGSSEEVKINGKTVRVRQYPWGSVQVENENHCDFVRLREMLLRVNMEDLRERTHGVHYETYRRQRLIEMG 306
                                    49        59        69|       87        97       107|      118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298        
                                                        69|                          107|                                                                                                                                                                                                     
                                                         78                           109

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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	Cis Peptide Bonds
		Ala B:220 - Val B:221	[ RasMol ]
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Description